Gene detail

Gene detail information of Glyur000842s00023850

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09520.1	2.00E-117	exocyst subunit exo70 family protein H4
NR	XP_003554337.1	0	PREDICTED: exocyst complex component EXO70B1-like [Glycine max]
Swissprot	tr\|Q9LZD3\|E70A1_ARATH	3.00E-54	Exocyst complex component EXO70A1
trEMBL	tr\|I1NA18\|I1NA18_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35880.1}

Sequence

Transcript Sequence

>Glyur000842s00023850.1
ACAAAACCGAAGCCCAGCAATACATCAACTGCGTTAACCAGCTTCAGAAGGCAATGCATTCCTTGCTCTCCATAAACCCTTCCTCCATTAAACTCATCCACGCGCAGAACCTTATGCAGATGGCAATGAAGAGGCTCAAGAAAGAGTTCTACCAGATCCTATCCATGAACCGGGCTCACCTTGATCCCGAATCCGTCTCCGCTAGATCCTCACGCGCCTCCGTCCACTCCAACACCTCCGACTACGACGACGACAACACCACGGCGGAAGACGAAATTCGCGCCGCCGGAGACTCAATCTCCGAAGTCGAGCACGTTTCATCCGTCGCCATGGCGGATCTCAGGTCCATCGCCGACTGCATGGTCTCGTCCGGTTACACGAAAGAATGCGTCACCGTCTACAACTCCATCAGAAAATCCATCGTGGACGAAGGCATTTACCGACTCAACGTGGAGAAGCTGAGCTCCACGCGCGTCAACAAGATGGATTGGGAAGTACTCGAGATGAAGATCAAGAGTTGGTTAGAGGCGGTTTGGATTTCAGTACGGACGCTCTTCCACGGAGAGAGGATCCTCTGCGATCACGTCTTCGGTGGATCCTCAGAGTCCGTTAGAGAATCTTGCTTCGCTGAGATTACCAGAGACGAAATCATCGCCGCCGGAGAAGATGTCTTCGCCTCGCTTCAACGGCTCATCGAGTCCGTTCAAACCATGCTCTCGGAGTTCGAATCAACGATCCACAAGGACGCTTCAAAGTTGCCGGTGAACGGCGGCGGCGTGCACTTACTCGCGGTTCAGACGATGAATTACCTCTCGATCCTCGCCGATTACAACAACGTGCTCTCTGACATATTCTTACCTCCATCGCCGAAGTCGTCGCCGTTGCCGGAGTCTTACTTGTACAGTCCAGATCAATCCGAAGACTCTACGTCGGCGACGCCGGCGCTAACGGCGCGTGTGGCGTGGCTGATTCTCGTTCTCCTCTGCAAACTCGACAGAAAGGCGAAGCAGTTCAAGGAGGTTTCTCTGTCTTACCTGTTTCTCGCGAACAATCTCCGGCACGTGGTCGCCAGAGTCCGCGGCTCAAACCTGATGTACGTGCTGGGCGAGGATTGGATCACGAAGCACGAGGGAAAGCGGGTGGCTTGGGGGGAAGTGGTTTCGTCGTTGCCGGAGAATCCGAATGCGGCGGAGGCGAGGGCGGTTTTCGAGAAGTTCAATTTAAGATTCGAGGAAGCGTATCGGAAACAGAACACGTTCGTAATAGCTGACAGAGAGCTTCGAGATGAAATAAAAGGGTCGATCGCGAGAAATATAGTGCCGAGGTATCGTGAGTGGTACAATACGGTGCTTGCAACGGTGGGTTCGGCGAGGGACATGGCGATGATGGAGTATGTCATTTTTACCCCTGAAGATGTTGATAATTACCTCTCTAACCTCTTCTTTTTTGGGACATGCTCCAGTGCTGTGTCGTCGTCTTCGATGATGGGGGAAGGAGGTGTAGCTGATTCAGCTGAAGGGTTAGAACTTAGAAGGGAATTGGATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00842	109482	112123	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006887 exocytosis

cellular_component
GO:0000145 exocyst

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000842s00023850.1	PF03081.10	Exo70	153	199	4.70E-06
Glyur000842s00023850.1	PF03081.10	Exo70	209	462	3.60E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.094
SRR1783600	control	0.095
SRR1783602	moderate drought stress	0.448
SRR1811619	moderate drought stress	0.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.245
DRR006520	Root Summer glycyrrhizin high producing strain	0.234
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.781
DRR006524	Root Summer glycyrrhizin low producing strain	0.793
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.788
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.185
SRR2868004	Drought Stress (root)	0.608
SRR2967015	Control (root)	0.630

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.141
SRR9715740	Leaf	6.964
SRR9715741	Leaf	24.656
SRR9715739	Root	1.628
SRR9715742	Root	4.028
SRR9715743	Root	2.784

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.644
SRR8749028	MeJA induced 9h	16.654
SRR8749029	MeJA induced 9h	13.129
SRR8749030	Uninduced	20.664
SRR8749031	Uninduced	25.786
SRR8749032	Uninduced	24.747

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.103
SRR8400027	Control - Root	0.792