Gene detail

Gene detail information of Glyur000842s00023847

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07710.1	3.00E-141	Ankyrin repeat family protein
NR	XP_004493908.1	0	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cicer arietinum]
COG	YP_001958455.1	6.00E-23	hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q6AWW5\|Y5262_ARATH	5.00E-156	Ankyrin repeat-containing protein At5g02620
trEMBL	tr\|I1NA20\|I1NA20_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35900.1}

Sequence

Transcript Sequence

>Glyur000842s00023847.1
ATGAAGAAACAATTGACAGGTTTACGGGGTGATTTTCCCCTGCACCTGGCAATCCGTGCTGGAAACTTAGAATTGGTGCTGGAAATTATCTCTGAGAATCAAGATGAAGATTTAAAGGAGTTGCTTTCGAAGAGAAATAACTCTGGTGAAACCGCCTTGTATGTTGCTGCTGAGAATGGTCATCTTGATATAGTGAAGGAACTGATCAGATACCATGATATTGGGTTGGCCAGCTTGAAAGCTAGAAATGGATTCGATGCATTTCACATTGCTGCTAAAAATGGAAACCTGGAGACTTGGTTGTGTATTGAATTGATGCCCAACAATGGTTATATGTTATCTGTCTATGATTTGAGTTCAAGTTTCCAAATTTGCCAGAATCTTTATGTCATCATGCTAGCTTTCAGGTTTCTCATTGGCCCTTACTTTATTAATCACTCAATTAAATTTATGATCAATTCAACCTTTGGAATTTGTCTGAGTCCTTCTCTCCTTTTCTGGTTTGCAGAGATATTAAAGGTCCTCATGGAGGCCATTCCTGAAATTTCAATGACCGTTGATCTGTCAAACACTACTGCACTGCACACTGCTGCAGCACAAGGACATTTTGAGGCGGTAGATTTTCTCTTGCAGAAAAGCAGCAGCCTTGTAACTATTGCAAAAAGCAATGGGAAAACTATATTTCATTCTGCTGCAAGAAATGGGCACGTGGAGATCATCAAGGCCTTGCTAAGCAAAGAACCTGAAATTGCAACGAGAATTGATAAGAAAGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAAAATCTTGAGGTGGTGGATGAGCTTGTGAAATTGAATCCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATTGCAACCCGGAAGGGTCGGCTACAGATTGTTCAGAAGCTACTAGATTGCAGAGAAATAAACAGGGATGTCATTAATAAATCTGGAGAAACTGCTTTGGATACTGCAGAGAGAAGTGGTCACTTGGAGATTGCCAACTTTCTGCAAGATCNTGGAGCTCAAAATGCCAAGTCCATCAAGTCACCTTCTACAAAAACAGCCCTGGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACATTCAAAACACAGAGACGCATGAAAGTCATAGCGAAGCGACTTAACAAGATGCAAGCTGAGGGGCTCAACAATGCAATCAACTCCAACACTGTTGTTGCTGTCCTCATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCAGGCCAGTACCCTGAAAACATAAAGAAACTCCCTAAAGGAATGTCACTTGGGGAAGCCAATATTGCCCCGAATATTGGATTCACAATATTCATACTCTTTGATACAACTGCACTCTTCATATCACTGGCTGTTGTGGTTGTCCAAACATCAGTGGTTGTTGTTGAGAGGAAAGCAAAGAAACAAATGACCGCGATTATAAACAAGTTAATGTGGGTGGCCTGTGTGATGATTTCTGTGGCATTCCTTGCAATGTCATACATAGTTGTGGGGGATCAGAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCCACTCTAGGAACACTTTGTTATTGGGTGATCGCTCACCGCCTTAAGGCCTCTAGATTGCGGAGTCTTAGGACAATGACAAGCAGTAGGCAGTCATTGACTATGTCAGTGATATCAGGCAAAGGATGTAATCATATTCATAGTCCAGTTGATAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00842	89044	91915	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000842s00023847.1	PF12796.2	Ank_2	11	72	4.40E-10
Glyur000842s00023847.1	PF12796.2	Ank_2	170	252	2.10E-14
Glyur000842s00023847.1	PF12796.2	Ank_2	262	351	2.60E-14
Glyur000842s00023847.1	PF13962.1	PGG	405	521	1.60E-24
Glyur000842s00023847.2	PF12796.2	Ank_2	11	72	3.40E-10
Glyur000842s00023847.2	PF12796.2	Ank_2	89	180	2.60E-19
Glyur000842s00023847.2	PF12796.2	Ank_2	190	279	2.00E-14
Glyur000842s00023847.2	PF13962.1	PGG	333	449	1.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.999
SRR1783600	control	8.000
SRR1783602	moderate drought stress	7.240
SRR1811619	moderate drought stress	7.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.506
DRR006520	Root Summer glycyrrhizin high producing strain	23.877
DRR006521	Root Winter glycyrrhizin high producing strain	15.084
DRR006522	Root Winter glycyrrhizin high producing strain	14.774
DRR006523	Root Summer glycyrrhizin low producing strain	57.090
DRR006524	Root Summer glycyrrhizin low producing strain	57.153
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.801
SRR2868004	Drought Stress (root)	12.705
SRR2967015	Control (root)	13.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.321
SRR9715740	Leaf	48.230
SRR9715741	Leaf	62.732
SRR9715739	Root	8.709
SRR9715742	Root	71.111
SRR9715743	Root	60.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.978
SRR8749028	MeJA induced 9h	56.848
SRR8749029	MeJA induced 9h	61.217
SRR8749030	Uninduced	48.896
SRR8749031	Uninduced	61.252
SRR8749032	Uninduced	70.525

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.605
SRR8400027	Control - Root	21.753