Gene detail

Gene detail information of Glyur000842s00023842

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G07670.1	endomembrane-type CA-ATPase 4
NR	XP_004493912.1	PREDICTED: calcium-transporting ATPase 4, endoplasmic reticulum-type-like [Cicer arietinum]
COG	YP_002509936.1	cation-transporting ATPase A [Halothermothrix orenii H 168]
Swissprot	tr\|Q9XES1\|ECA4_ARATH	Calcium-transporting ATPase 4, endoplasmic reticulum-type
trEMBL	tr\|F9W2W4\|F9W2W4_MEDTR	Type IIA calcium ATPase {ECO:0000313\|EMBL:DAA34949.1}

Sequence

Transcript Sequence

>Glyur000842s00023842.1
ATGGGGAAGGGAGGCCAAAATTATGGGAGAAAAGAGAACACGAGTTCCGACGCTCCGGACGGTGAAATCTTCAAGGCGTGGGCGAAGGACGTGAGCGAATGCGAGGAGCACTTCAAGGTGAGAGTGAAAACGGGGTTGAGCGTCGACGAGGTTGAGAATCGGCGCAAGATCTATGGCTGGAACGAGTTGGAGAAGCACGAGGGGCAATCCATATGGAGTCTGGTTCTGGAACAGTTCANCGACACCTTGGTTCGGATTCTCCTCGGCGCCGCCATCATCTCCTTCGTCCTCGCCTGGTACGACGGCGAAGAAGGCGGCGAGATGGAGATTACGGCTTTTGTGGAGCCTCTGGTGATATTCCTGATATTGATTGTGAACGCAATTGTTGGGGTTTGGCAGGAGAGCAATGCGGAGAAGGCACTTGAGGCTCTTAAGGAGATTCAATCGGAGCACGCCTCTGTGATTCGAGACGGCGCGAAAATTCCTAGTTTGCTGGCCAAGGATCTCGTGCCCGGCGATATCGTGGAGCTTAAGGTTGGAGATAAGGTGCCTGCGGATATGCGGGTTGTGGAATTGATAAGCTCCACCCTGCGATTGGAGCAGGGTTCCTTGACTGGAGAGAGTGAAGCAGTGAATAAGACTAACAAGCCTGTTGCTGAGGATACTGATATTCAGGGCAANAGGTGTATGGTTTTCGCCGGGACGACCGTTGTTAACGGGCATTGCTATTGCTTGGTCACTCAGACNGGCATGGACACCGAGATTGGGAAGGTGCATAAGCAGATACACGTGGCGTCGCAGAGTGAGGATGATACCCCATTGAAGAAGAAACTCAATGATTTCGGAGAGAAGCTGACCATTATGATTGGGCTCATCTGTGTTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTCACATGGGAGTATGTGGATGGGTGGCCAAGGAACTTCAAGTTCTCGTTTGAGAAGTGCACGTATTACTTTGAGATTGCTGTGGCATTGGCCGTGGCTGCTATTCCAGAGGGATTACCTGCTGTCATCACGACTTGCCTCGCGCTCGGTACTCGCAAGATGGCACAGAAGAATGCCCTGGTTAGGAAGCTACCCAGCGTGGAAACTCTGGGTTGTACAACCGTTATTTGTTCAGATAAAACTGGTACATTGACTACGAATCAGATGGCTGTGTCGAAACTAGTAGCTATTGGCCATAATGTGGACACACTGCGAGCCTTCAAGGTGGAAGGNACCACGTACAATCCATTGGATGGTCAAATAGAGAACTGGCCAACAGGCCGATTGGATGCTAATCTTCAGATGATAGCAAAAATAGCNGCTAATTGTAATGATGCTGGGGTCTCACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCGTTAAAGGCAAGTTCTNTCTACGTTCTTTGGCTAATTTCTCATGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGTACAATCAGGAAGCAAAAGTATCATACTACGTTGTTGTGAATGGTGGAATGAACATGACCGTCGGATTGCTACTCTGGAGTTTGACCGTGACAGGAAGTCAATGGGTGTTATTGTGGATTCTGGCCCGGGGAAAAATGTGCTGCTGGTTAAGGGTGCTGTAGAAAATGTGTTGGATAGAAGCTCTAANATTCAGTTGCGTGATGGTTCTATTGTGAAACTGGACAATAATGCTAAGAACCTCATATTGCAAGCTCTTCATGAAATGTCCACCAGTGCATTACGCTGTTTGGGATTTGCCTACAAGGATGAGCTCCCTGCGTTCGAAAACTACAATGGTAATGAAGATCATCCAGGCCACCAGCTTTTGCTTGATCCTTCCAACTATTCATCAATTGAAAGTGAACTCATTTTTGTTGGTTTGGTTGGGTTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTGAAGACTGCAGAGCAGCTGGAATTCATGTTATGGTTATAACTGGAGACAACAAGAACACTGCAGAAGCTATATGCCGTGAAATAGGTGTTTTTTCTCCCAATGAAGATATAAGTTCGAAAAGTTTAACTGGTAAAGATTTTATGGAACTCCGTGATAAGAAAGCTTATCTGAGACAGAGTGGTGGNCTTTTGTTTTCGAGGGCTGAACCTAGACACAAGCAAGAAATTGTGAGGCTTCTTAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCACCTGCCTTAAAGCTTGCAGACATTGGTGTTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCAGACGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCGTCCAATATCGGCGAAGTTGCTTCTATTTTTCTTACGGCTGCACTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCGGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTAACTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTACGTTGGATTAGCTACAGTTGGTATCTTCATCATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGTGGGGATGGGCATTCTCTTGTCACTTACNCCCAACTTGCCAACTGGGGTCAATGCTCCACTTGGAAGAATTTCACTGCTTCTTCCTTCACCGCTGGTGCTAGAACTATCTCCTTTGATGACNCCTGTGACTACTTCCAGACTGGTAAAGTGAAAGCTATGACACTGTCTCTCTCTGTGTTGGTAGCCATTGAAATGTTTAACTCTCTCAATGCGCTGTCTGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTAAATCCTTGGCTTCTTTTGGCAATGTCTGTGTCGTTTGGACTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCACAAGTATTTGGCATCGTGCCCCTGAGCTTCAATGAGTGGCTTTTGGTTTTGGTTGTTGCACTTCCTGTCATTCTAATTGACGAGGTTCTGAAATTTGTGGGGAGATGTACGAGTAGGTATCAAGCATCATCAAGAAGATCAAAGCAAAAATCTGAGTAGACANCTTACTGTAGTCTTTAGAGAAATTGCTCAATCCTTTAGCAGTTCGGAAGTTGTTATCCATGAGACTGAAGAGGTGGCCACAACTCCAATTAATTTTTATAGAAGCAATATTTTAGGCCTCTCTGTAGTCGTCATCTCATTTTATAATGACGGATGGCTGGGCTTGCATTGGGTGCACTATATGTTTCTTTTAATCTTTTTATTATCCCTTTTGCTTTGTTTTTTAGAACCTTTTCAAGATTTTCAAATGAAAGGGAAAAACCTTTTATTTATTACCTATTCACATTTGTCTTCTTGAAAACGCGAAGACATCTTGAGGCAGAGGGAGTCATTTGCTCGAGTCGATTTTGCTTCTAATTATCATCATGTTGGGTTACTGTCTATTCCCATCGGTTATCAGAAATCAGAAAGAAAGTGCATNTATCGGTTTCCCGTACTTATTTTCCTAGTAGATGAACGCCCAATCTGTTGAGAAAATACTCCTTTTTTTTTCTTTCTCGGGGTCAATTTCTAGGGAGATTAAGACAGGCAACTAACAATATGAAACTGCCAAACGATAATGATGACATGTTGTTAGTTTTGATCCATCATGACCCTTGCGCTCCATGCTAATCTTTTTGACTATTGGGTTCTTGATTAGTTTCTTATGATAGAATACTTTCGGCTCATCATGAGCCTAGCAAGGTTAGCCTTTTTAAGAGATGTAAAACGCTAAACTAGTAAACTACAATAATCTTGTCTGTCAGCAAATCGATGGGTTATTGTTGGAC

Protein Sequence

>Glyur000842s00023842.1
MGKGGQNYGRKENTSSDAPDGEIFKAWAKDVSECEEHFKVRVKTGLSVDEVENRRKIYGWNELEKHEGQSIWSLVLEQFXDTLVRILLGAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHASVIRDGAKIPSLLAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVAEDTDIQGXRCMVFAGTTVVNGHCYCLVTQTGMDTEIGKVHKQIHVASQSEDDTPLKKKLNDFGEKLTIMIGLICVLVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGHNVDTLRAFKVEGTTYNPLDGQIENWPTGRLDANLQMIAKIAANCNDAGVSQSEHKFVAHGMPTEAALKASSXYVLWLISHVLVEKMGLPEGSKDVQSGSKSIILRCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGPGKNVLLVKGAVENVLDRSSXIQLRDGSIVKLDNNAKNLILQALHEMSTSALRCLGFAYKDELPAFENYNGNEDHPGHQLLLDPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGIHVMVITGDNKNTAEAICREIGVFSPNEDISSKSLTGKDFMELRDKKAYLRQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGIFIIWYTHGSFLGIDLSGDGHSLVTYXQLANWGQCSTWKNFTASSFTAGARTISFDDXCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVALPVILIDEVLKFVGRCTSRYQASSRRSKQKSE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00842	61536	67954	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000842s00023842.1	PF00690.21	Cation_ATPase_N	27	94	3.50E-18
Glyur000842s00023842.1	PF00122.15	E1-E2_ATPase	118	373	1.80E-66
Glyur000842s00023842.1	PF00702.21	Hydrolase	378	757	1.20E-29
Glyur000842s00023842.1	PF00689.16	Cation_ATPase_C	828	1053	2.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.090
SRR1783600	control	27.080
SRR1783602	moderate drought stress	22.018
SRR1811619	moderate drought stress	21.930

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.865
DRR006520	Root Summer glycyrrhizin high producing strain	50.291
DRR006521	Root Winter glycyrrhizin high producing strain	20.964
DRR006522	Root Winter glycyrrhizin high producing strain	20.290
DRR006523	Root Summer glycyrrhizin low producing strain	45.075
DRR006524	Root Summer glycyrrhizin low producing strain	45.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.064

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	120.145
SRR2868004	Drought Stress (root)	104.002
SRR2967015	Control (root)	84.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.671
SRR9715740	Leaf	36.585
SRR9715741	Leaf	44.594
SRR9715739	Root	33.656
SRR9715742	Root	91.748
SRR9715743	Root	83.958

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.172
SRR8749028	MeJA induced 9h	36.638
SRR8749029	MeJA induced 9h	20.804
SRR8749030	Uninduced	12.798
SRR8749031	Uninduced	12.988
SRR8749032	Uninduced	13.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.726
SRR8400027	Control - Root	95.913