Gene detail

Gene detail information of Glyur000842s00023839

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37360.1	0	ABC-2 type transporter family protein
NR	XP_004493913.1	0	PREDICTED: ABC transporter G family member 20-like [Cicer arietinum]
COG	YP_008149444.1	4.00E-32	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9ZUT0\|AB2G_ARATH	0	ABC transporter G family member 2
trEMBL	tr\|G7L0M9\|G7L0M9_MEDTR	0	White-brown-complex ABC transporter family protein {ECO:0000313\|EMBL:AES81744.1}

Sequence

Transcript Sequence

>Glyur000842s00023839.1
ATGTCACGCCTAGCACCCACACCTCCCAATCCCAACCCAGTCGCCGAGGATAGGCTTTCTTTCTTCAACCAATCCATGGAGCTTATTCAACTCCCAAACGCTCCCTGCAGAACCCGATCCCATCTCTCTCCCACACTCGGCCAGCTCCTCAAACGCGTCGAAGATGCTCAAAACAACANCACTACTGAACCACCGCACCATGTTCTGGACCTCTCCTCTTCTTCTTCCACCACCACCACACTTCACTCTCACCCTTTCTTCCTCTCTTTCACCAACTTAACTTACAGCGTCAAGCTCCGCCGAAAGATGGCTCTCTCCCCCTGCTTTAGTTCCTCTACCCACAGCTCTCACCCGGAAAACGAAGACGCCGGTGCCGGAGCAAAACCCAACCGAACCAAGATTCTCCTAAACGGAATCTCCGGCGAGGCAAGGGACGGCGAGATCATGGCCGTCCTGGGAGCAAGCGGCTCCGGCAAGTCCACGCTGATCGACGCCCTCGCCGACCGGATCTCCAAGGAGAGCCTGAAAGGCACCGTGACGCTAAACGGCGACGTTCTGGAGTCCAGACTCCAGAAGGTTATCTCCGCTTACGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACAGTCGAGGAGACTCTCATGTTCTCCGCAGAGTTTAGACTCCCACGCTCCCTCTCCAAGTCCAAGAAGAAGTCACGCGTCCAAGCACTCATCGACCAGCTCGGCCTCCGCACCGCCGCTAAAACCGTCATCGGAGACGAAGGCCACCGCGGTGTCTCCGGCGGTGAGCGCCGCCGAGTCTCAATCGGAATCGACATCATCCACGACCCAATCATTCTTTTCCTCGACGAGCCAACCTCGGGTTTGGACTCCACCAGCGCCTTCATGGTGGTGAAGGTGTTGCAGCGAATCGCCCAGAGCGGAAGCATCGTCATCATGTCCGTTCATCAACCAAGCTACCGAATCCTTGGACTTCTTGACCGTCTGATCTTCCTCTCACACGGCCAAACCGTCTTCAGCGGCTCTCCGACGAGTCTCCCGGACTTCTTCTCGGAGTTCGGCCACCCCATACCGGAGAACGAGAACCGCACGGAATTCGCACTGGACCTAATCCGCGAACTGGAGGAAGCACCGGGTGGAACCAAGAGCCTCGTGGAGTTCAACAAATCATGGCAATTGAAGAACAACAATAACAACAACACCGCATGTGAGAAAACACTCAACGGAGGACCCAAAGTGTGTTTGAAGGACGCAATCAGCGCTAGCATTTCGAGGGGTAAACTGGTATCAGGCGCCACCAGCAGTAACTCAACGGCGTCATCGGTTCCCACGTTTGCCAATCCGTTTTGGATTGAGATGGCGGTTATAGCAAAACGGTCTGTAACAAACTCAAGGCGGATGCCCGAATTATTCGGAATCCGTTTGGGTGCAGTCCTCGTGACGGGGGTAATTTTGGCAACAATCTTTTGGCGGTTGGACAATTCACCAAAGGGTGTTCAGGAGCGTTTGGGTTTCTTCGCATTCGCCATGTCAACAACGTTCTACACGTGCGCCGAGGCAATCCCCGTTTTCCTCCAAGAGCGATACATCTTCATGAGGGAAACCGCTTACAACGCCTACCGTCGCTCCTCCTACGTCCTCGCACACTCCCTCATCTCACTCCCTTCTCTAATTTTCCTCTCCTTCGCCTTCGCCGTCACCACTTTCTGGTCNGTGGGACTCGCCGGCGGCACCTCCGGCTTCCTCTTTTACTTCTTCACCATCTTTGTCTCCTTCTGGGCCGGGAGCTCCTTCGTGACGTTCCTGTCCGGTGTCGTTTCCCACGTGATGCTTGGTTTCACGGTGGTGGTTGCTATTTTGGCCTATTTCCTTCTCTTTAGCGGGTTCTTCATCAGCAGGGATAGGATCCCTCCCTATTGGTTATGGTTCCACTATCTTTCCCTTGTGAAGTACCCTTACGAGGGAGTGCTTCAGAACGAGTTCGGTGTTATGCCACCAACGTGTTTCGTGAGGGGGATTCAGATGTTCGATAACACGCCGTTGGGGAATGTTCCCGAGTTCCTGAAGGTGGAGCTGCTGAAGAGCATGAGCGGCACGCTGGGCATGAACATCACCGCCTCCACCTGCGTCGTCACCGGTGCGGATATACTGAAGCAGCAGGGGATCACGCANCTCAGCAAGTGGAACTGCCTGTTGGTGACCATTGCTTGGGGNTTCTTCTTTCGCTTCCTCTTTTACTTGACGCTGCTATTTGGGAGCAAGAACAAGAGGAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00842	55603	57882	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000842s00023839.1	PF00005.22	ABC_tran	136	288	6.50E-24
Glyur000842s00023839.1	PF01061.19	ABC2_membrane	456	662	2.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.424
SRR1783600	control	44.886
SRR1783602	moderate drought stress	49.561
SRR1811619	moderate drought stress	49.051

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.243
DRR006520	Root Summer glycyrrhizin high producing strain	0.283
DRR006521	Root Winter glycyrrhizin high producing strain	3.706
DRR006522	Root Winter glycyrrhizin high producing strain	3.553
DRR006523	Root Summer glycyrrhizin low producing strain	0.097
DRR006524	Root Summer glycyrrhizin low producing strain	0.146
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.917
SRR2868004	Drought Stress (root)	38.859
SRR2967015	Control (root)	35.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.961
SRR9715740	Leaf	5.193
SRR9715741	Leaf	6.338
SRR9715739	Root	80.334
SRR9715742	Root	36.631
SRR9715743	Root	39.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.179
SRR8749028	MeJA induced 9h	7.308
SRR8749029	MeJA induced 9h	10.664
SRR8749030	Uninduced	24.247
SRR8749031	Uninduced	15.879
SRR8749032	Uninduced	59.431

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.124
SRR8400027	Control - Root	78.911