Gene detail

Gene detail information of Glyur000842s00023832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12620.2	6.00E-120	Protein phosphatase 2C family protein
NR	XP_004493923.1	0	PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LHJ9\|P2C38_ARATH	4.00E-171	Probable protein phosphatase 2C 38
trEMBL	tr\|I1NA36\|I1NA36_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36040.1}

Sequence

Transcript Sequence

>Glyur000842s00023832.1
ATGGTTGGAAGATCCTGCTGGAAACCAACTGTAGAGGGTGATGATGGAGATGTGAGAGGGCAAGTTGATGGGCTGCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTCATTCAAGCCAATAGTTCATTAGAGGACCGTAGCCAACTAGAATCAGGACCCTTGAGTTCTGACTATTTNGGTCCTCAAGGAACTTTTATTGGTGTATATGATGGTCATGGTGGAACTGCAGCCCCACAGTTCGTCAGTGATAATCTATTCTACAATTTCAAGAGCATTTCAGAGAAGGTTATCAGAAGGGCCTATTCGGCAACAGAAGAGGGTTTTCTGTCCCTAGTGAAGAAGCAGTGGCTAAGCAAGCCACAGATTGCAACCTCGGGTTCATGTTGTTTGGCTGGGATAATTTGCAATGGCATGCTATATATTGCAAATGCAGGAGACTCAAGGGCGGTGTTAGGAAGAGTGGAGAGGGCAACAAGGGAGATATCAGCTGTTCAATTATCTGCAGAACACAACGTTAACATAGAGACCGAGAGAGATGAAGTTCGGTCAAAGCANCCTTATGATTCACAAATCGTGGTTATGAAACACAAAGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAGAGCAGAATTTAACAGAGAGCCTCTGCCACATAANTTTAGACTACCTGAAACTTTCTTCAAGCCAATCCTTAGTTGTGAGCCATCAATATCAGTGCATAAACTCCATNCCGACGATCAGTTTCTCATCTTTGCTTCTGATGGTTTGTGGGAGCATCTCAGCAACCAAGTAGTTGTCAATATAGTCAGCAATAACCCACGCAATGGAATAGCTAGGAGGCTTGTGAAAGCTGCACTTCGAGTAGCAGCTAAGAAGAGAGAAATGAGATTCTCAGACCTCCAAAAGATTGAACAAGGGGTGAGGAGACACTTCCATGATGATATTACAGTGATTGTTGTGTTTCTAAATCCCAAACTGATTGATAATGGCTCTCTCTGTGGCTCTCCTCTTTCAATCAGAGGAGGTGGGACTTCCCTTTCTTAGAGCAAAGAAATNTGGGCTTCCTCCTGTTTTCAGAATTCTTGTATATAAAATAGGTAGATAACTTGACATCAAACTTCCATAATAGTTTCTGGTTGAAGCTTAAAGATTCTCATGGAACGAGGTTGTTTCCCTATCCCCACCACCNCAGGAAAAAAAAAATGAAGGGAAGTCGTCAATAGCAGATTTTTTTTTTATTAAAAAAGTAACCTAGCAAGTTCTAAATGCCACATGATTCCCTCATGTTCAGTCTTTGATCTGATTAACGTTGTTCTATATTTATTGTGTAAATTTTACCTATGTTACTTGCGACAACGGTCTCAGGTCGTACCTTATTAACTCAAACTTAAGCAAGGGTGCGTAACAACTAAGCTCTGTAATTTGCATATCAACTTGGTCGTGTCGGTTTTGTATTGGGAAATCTTTTTATGGCATGTATGTATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00842	22070	24473	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000842s00023832.1	PF00481.16	PP2C	70	308	6.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.346
SRR1783600	control	0.267
SRR1783602	moderate drought stress	0.456
SRR1811619	moderate drought stress	0.418

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.140
DRR006520	Root Summer glycyrrhizin high producing strain	0.208
DRR006521	Root Winter glycyrrhizin high producing strain	0.202
DRR006522	Root Winter glycyrrhizin high producing strain	0.251
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.010
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.238
SRR2868004	Drought Stress (root)	1.081
SRR2967015	Control (root)	0.749

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.466
SRR9715740	Leaf	16.432
SRR9715741	Leaf	9.136
SRR9715739	Root	0.059
SRR9715742	Root	0.378
SRR9715743	Root	0.284

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.219
SRR8749028	MeJA induced 9h	0.209
SRR8749029	MeJA induced 9h	0.526
SRR8749030	Uninduced	0.178
SRR8749031	Uninduced	1.387
SRR8749032	Uninduced	0.966

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.255
SRR8400027	Control - Root	1.441