Gene detail information of Glyur000841s00026271 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58640.2 | 5.00E-56 | Selenoprotein, Rdx type |
| NR | AFK49544.1 | 6.64E-119 | unknown [Lotus japonicus] |
| COG | YP_002523702.1 | 2.00E-06 | SelT/SelW/selH [Thermomicrobium roseum DSM 5159] |
| Swissprot | tr|Q9STZ2|SELT_ARATH | 5.00E-77 | SelT-like protein (Precursor) |
| trEMBL | tr|I3TAK2|I3TAK2_LOTJA | 2.00E-119 | Uncharacterized protein {ECO:0000313|EMBL:AFK49544.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00841 | 88050 | 90265 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000841s00026271.1 | PF10262.4 | Rdx | 67 | 191 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.751 |
| SRR1783600 | control | 11.728 |
| SRR1783602 | moderate drought stress | 9.393 |
| SRR1811619 | moderate drought stress | 9.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.498 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.549 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.759 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.594 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.240 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.604 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.844 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.928 |
| SRR2868004 | Drought Stress (root) | 7.224 |
| SRR2967015 | Control (root) | 7.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.926 |
| SRR9715740 | Leaf | 9.748 |
| SRR9715741 | Leaf | 9.967 |
| SRR9715739 | Root | 6.719 |
| SRR9715742 | Root | 5.106 |
| SRR9715743 | Root | 5.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.978 |
| SRR8749028 | MeJA induced 9h | 35.449 |
| SRR8749029 | MeJA induced 9h | 30.574 |
| SRR8749030 | Uninduced | 30.206 |
| SRR8749031 | Uninduced | 21.200 |
| SRR8749032 | Uninduced | 21.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.535 |
| SRR8400027 | Control - Root | 11.635 |