Gene detail

Gene detail information of Glyur000841s00026259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62790.1	3.00E-27	1-deoxy-D-xylulose 5-phosphate reductoisomerase
NR	AEB91529.1	2.69E-39	1-deoxy-D-xylulose 5-phosphate reductoisomerase [Glycine max]
COG	YP_007070945.1	3.00E-16	1-deoxy-D-xylulose 5-phosphate reductoisomerase [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q9XFS9\|DXR_ARATH	4.00E-32	1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBL	tr\|F4ZZ27\|F4ZZ27_SOYBN	1.00E-39	1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000313\|EMBL:AEB91529.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00841	34212	35219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00099	dxr	EC:1.1.1.267	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0008299 isoprenoid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000841s00026259.1	PF13288.1	DXPR_C	2	61	3.10E-17

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.321
SRR1783600	control	0.476
SRR1783602	moderate drought stress	0.943
SRR1811619	moderate drought stress	0.712

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.399
DRR006520	Root Summer glycyrrhizin high producing strain	0.775
DRR006521	Root Winter glycyrrhizin high producing strain	1.594
DRR006522	Root Winter glycyrrhizin high producing strain	1.365
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.586

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.119
SRR2868004	Drought Stress (root)	0.499
SRR2967015	Control (root)	0.530

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.330
SRR9715740	Leaf	3.397
SRR9715741	Leaf	34.305
SRR9715739	Root	0.054
SRR9715742	Root	0.322
SRR9715743	Root	0.575

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.071
SRR8400027	Control - Root	1.134