Gene detail

Gene detail information of Glyur000841s00026256

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07270.2	3.00E-151	GTP cyclohydrolase I
NR	XP_004510246.1	0	PREDICTED: uncharacterized protein LOC101491091 [Cicer arietinum]
COG	YP_006528230.1	1.00E-37	GTP cyclohydrolase I [Melioribacter roseus P3M-2]
Swissprot	tr\|Q8VYU3\|GCH1_SOLLC	0	GTP cyclohydrolase 1 {ECO:0000305}
trEMBL	tr\|K7MG23\|K7MG23_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G11090.1}

Sequence

Transcript Sequence

>Glyur000841s00026256.1
ATGGGGGTTTTGGGTAACGGGAATTCAAATGGTGAGCTTGAAAATGTAGCAGTAAGTTTCCATTGTGATGAAGTGGGTTTTGAGGAAGAGACCAATACAAGTGCCATTGAGTCTGCTGTCAAAGTCCTGTTGCTGGATCTTGGGGAAGATATCAACAGGGAAGGCCTTAGAAAGACACCACTTCGTGTTGCCAAGGCCTTTTCTGAAGGAACTAGAGGTTATAGGCAAAAGGTGATGGACATTGTAGGAGGTGCTTTATTCCCTGAAGCTGGCCTAGATGATAACAAAATTGGTCATGCAGGTGGAGCAGGTGGACTTGTGATTGTCCGAGACATTGACCTCTATTCCTATTGTGAGTCATGCTTGCTACCATTCCAGGTGAAGTGCCATGTTGGTTATGTCCCTTCTGGCCAAAGAGTTGTAGGCTTAAGCAAGCTCCCTCGTGTGGCTGAAGCATTTGCAAAACGACTCCAAGAGCCTCAGCATCTAGCAGATGAGGTTTGCTCTGCTTTGCATCAGGGGATACAGCCAGCAGGTGTTGGTGTCATCCTACAATGCACACACATCCCCTTTCCAGACACAGAATCAAACATTGTAGACTCAAAAAACCACAGTGGATGGGTGAAGAGACTTGTTTCTTCAGGATCTGGGGTTTTTGAAAACAAAGATGCTGACATATGGGGTGATTTCTTTAGCCTTCTTATGTCTAGAGGTATCGATAAGAACAAAGTGCATCTTGGGGGATCATGGTGTCCTTCTGTGTCTTCCTTTTCTGCACAAGTTTCATCCAAGAATATTGGAGAAGAAGTCAATCCTGTCATGGTCACTGCAGTGTCCTCAATTCTTGAATCTTTAGGGGAAGATCCAACAAGGAAGGAGATTTTAGGGACTCCTAGTAGGTTTGTGAAATGGCTGATGAACTTCAAGTGGAGTAGTAACATTGATATGAAGCTCAATGGCTCTCTTTCTGGTGGGGTAGATTGTTTGAAAACCAATGGGGAGGTAAGCTTTGAAGACAAACAAATATACTCAGAGCTGAACTTGCCTTTTTGGTCACAATGTGAGCACCATTTACTACCCTTTTATGGTGTTGTTCACATAGGGTACTTCATTTCCAAAGGGTTTGATCCCATTGTTGGAAGGTCCCTTTTACAGTCAATAGTGCATTTTTATGGCTTCAAACTCCAGGTTCAGGAAAGGCTCACAAGGAAGATAGCAGAAACCATTTCACCACTGCTAGGTGGAAATGTGATAGTAGTTGTGGAGGCAAGTCACACATGTATGATCTCTAGGGGAATTGAGAAGTTTGGAAGTAGTACAGCTACCATTGCTGTCTTGGGACGCTTTTCAACTGACCTTGCTGCAAGGACCACGTTCTTGGAGAGTATTCCAAGTGCTACTACATCTTTTGAAGGGCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00841	24472	26219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01495	GCH1, folE	EC:3.5.4.16	Folate biosynthesis	map00790

Gene Ontology

biological_process
GO:0046654 tetrahydrofolate biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0003934 GTP cyclohydrolase I activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000841s00026256.1	PF01227.17	GTP_cyclohydroI	36	189	3.40E-35
Glyur000841s00026256.1	PF01227.17	GTP_cyclohydroI	276	463	5.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.253
SRR1783600	control	1.270
SRR1783602	moderate drought stress	1.344
SRR1811619	moderate drought stress	1.316

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.296
DRR006520	Root Summer glycyrrhizin high producing strain	1.160
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.077
DRR006524	Root Summer glycyrrhizin low producing strain	0.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.130

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	211.886
SRR2868004	Drought Stress (root)	99.235
SRR2967015	Control (root)	139.785

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.164
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.036
SRR9715739	Root	13.830
SRR9715742	Root	14.859
SRR9715743	Root	14.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.085
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.507
SRR8749032	Uninduced	0.680

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	87.975
SRR8400027	Control - Root	94.186