Gene detail

Gene detail information of Glyur000841s00026254

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07270.1	2.00E-161	GTP cyclohydrolase I
NR	XP_004510246.1	0	PREDICTED: uncharacterized protein LOC101491091 [Cicer arietinum]
COG	YP_007109111.1	3.00E-38	GTP cyclohydrolase I [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q8VYU3\|GCH1_SOLLC	0	GTP cyclohydrolase 1 {ECO:0000305}
trEMBL	tr\|A0A072TL11\|A0A072TL11_MEDTR	0	GTP cyclohydrolase I 1 {ECO:0000313\|EMBL:KEH18122.1}

Sequence

Transcript Sequence

>Glyur000841s00026254.1
ACGCCATCACCACCTTCATTTTTCCTTGCACCGCCTCCATATATATCAAATCAACCATAGCGCGAAACACACACACACCAACATCTCTTCTCTTCTCTTCTTCCTTGGTGGGTCCTCCTTTAGCATTCTGATTAGATTAGATTACTTTATACCGAATAGAAACCTCAGATACCAGCATCCACTCATTCTAAGATCAACGTTTACCCCACAAATCCACTCTTTTTTCCATATTGCCAACCTTTTCCCCGATTTTCTCTCTACCTATATGTTCCTCATCTCCTCATTTCTGAGACCGAGATCTATTGAGAACCCTTCTGCATTTGTTTTTTCTTCCTTGTCATCTTTTTNATGCGTGCTTGATTTGTGATCTACGTGTTCTCTCTCATTTTGTTTATTTTCCGGATTCGTTTTGTGTTGTCCTGAGCATTTGGGCTGTTATCCCTGTTGGACCCTTCATTTGTTTTTGAGAGCCTTCAGTAACCAANTTGTCTTGCTTTGAAGATTTGGCTTTTGTTGTTGGAGAGTTGGGTACTTGTACAAAATTACAAATCTGGGTCGATATTGGTTCTTCCTAGCTGTGTGGCTAGCTGCTGTGTATTTTTAGTTTTTATTTTGTCTGTTTCGGATATTGGGGGAGGTGGTAATTTTTGTTTTGTAGGATTTGTTGTTATTGCAATGGGCTGTTTTGACGAGGGGCATTTCAATGGTGAGCTTGAGAATGGAGTGAGTAATATTGGATGTGGTGAGGTGGGTTTTGAGGAAGAGGCAAATACTACAGCTGCCATTGAGGATGCTGTGAAGGTCCTCTTGCTTGGTCTTGGGGAAGATATTAACAGGGAAGGTCTCAGAAAGACACCACTTCGTGTTGCAAAAGCCCTCCGTGAAGGAACCAGAGGCTATAGGCAAAAAGTGAAGGACATTGTTGAAGGTGCTTTATTCCCTGAAGCTGGCCTAGATAATAATAAAATTGGTCATGCAGGGGGTGCAGGTGGACTTGTGATTGTCCGGGATCTTGACCTTTATTCCTATTGCGAGTCTTGCTTGCTGCCTTTCCAAGTCAAATGTCATGTGGGTTATGTCCCTTCTGGCCAAAGAGTTGTTGGTTTAAGCAAGCTCTCTCGCGTGGCTGATGTATTTGCTAAACGACTTCAAGAGCCTCAGCGTCTGGCAGATGAGGTGTGTTCAGCTTTGCATCAGGGAATAAAGCCAGCAGGTGTTGCTGTCATACTTCAGTGTAGACATGTCCACTTTCCAGACATAGAATCAATCTTTCTAGAATCAAACCAGAAAGGTTGGGTGAAGACACTTGTTTCATCAGGTTCTGGGGTCTTCAAAAACAAAAATGCAGATGTATGGACTGATTTCTTTTTCCTTCTTAAATCTAGAGGTATTGATNCAGAAAAAGTTCATCTTAGAGGATCGTCTGACCAATGCTGGTGTCCATCTCTGTCTGCTCTTTCTGCTAAAGTTTCCTCCAAAATTGGACCAGTCAATCCTGCAATGGTCACTGCAGTATCTTCAATTATAAAATCTTTGGGAGAAGATTCGGTTAGGAAGGAGCTTGTGGGGACTCCTAATCGATTTGTGAAATGGCTGTTGAACTTCCAAAATATTGACATGGATGTGAAGCTGAATGGCTCCCTCTGTGGTGGGATAGATTCTTTGAACACCAATGGGGAGGTAAACTTTAATGACAAACAAATATACTCCGAGTTGAACTTGTCCTTTTGGTCACAGTGTGAGCATCATATACTTCCATTTCATGGTGTTGTTCACATAGGATACTTCCTTTCAGAAGGATTCAATCCCATTGGAAAATCCCTTTTACAGTCAATAGTGCATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGACTTACAAGGCAGATAGCAGAAACCATTTCACCACTTTTAGGTGGGAATGTAATAGTAGTTGTAGAGGCAAGCCACACATGTATGATTTCTAGGGGTATTGAGAAGTTTGGAAGTAGTACAGCTACCATTGCTGTATTAGGACGCTTTTCAACCGACCATGCTGCTCGGGCTGCATTCTTGCAGAGTATTGCAAGTGCTACATCTTCTGGAGGGCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00841	19524	23182	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01495	GCH1, folE	EC:3.5.4.16	Folate biosynthesis	map00790

Gene Ontology

biological_process
GO:0046654 tetrahydrofolate biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0003934 GTP cyclohydrolase I activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000841s00026254.1	PF01227.17	GTP_cyclohydroI	37	190	4.80E-36
Glyur000841s00026254.1	PF01227.17	GTP_cyclohydroI	278	463	1.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.193
SRR1783600	control	6.557
SRR1783602	moderate drought stress	5.258
SRR1811619	moderate drought stress	4.454

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.237
DRR006520	Root Summer glycyrrhizin high producing strain	5.153
DRR006521	Root Winter glycyrrhizin high producing strain	5.433
DRR006522	Root Winter glycyrrhizin high producing strain	5.348
DRR006523	Root Summer glycyrrhizin low producing strain	5.796
DRR006524	Root Summer glycyrrhizin low producing strain	5.456
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.384
SRR2868004	Drought Stress (root)	19.571
SRR2967015	Control (root)	15.919

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.909
SRR9715740	Leaf	11.698
SRR9715741	Leaf	14.295
SRR9715739	Root	7.084
SRR9715742	Root	13.159
SRR9715743	Root	10.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.797
SRR8749028	MeJA induced 9h	7.315
SRR8749029	MeJA induced 9h	3.958
SRR8749030	Uninduced	14.308
SRR8749031	Uninduced	4.975
SRR8749032	Uninduced	3.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.086
SRR8400027	Control - Root	13.188