Gene detail

Gene detail information of Glyur000839s00039835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31260.1	2.00E-103	zinc transporter 10 precursor
NR	XP_004490323.1	0	PREDICTED: fe(2+) transport protein 1-like [Cicer arietinum]
Swissprot	tr\|Q75HB1\|IRT1_ORYSJ	5.00E-142	Fe(2+) transport protein 1 (Precursor)
trEMBL	tr\|G7LAI9\|G7LAI9_MEDTR	0	ZIP zinc/iron transport family protein {ECO:0000313\|EMBL:AET05397.2}

Sequence

Transcript Sequence

>Glyur000839s00039835.1
ATGGCAAAGAATAACCCCAACCTTGTTGTTACAATCTTCGTGTTGTTTCTGTTAGTAGTGGCANTGCCGCGAGCCTATGGTGGGGGAGAATGCGCGTCGAAGTACGAAGGAGGGTGCCACGACAAGGACGAGGCACTAAAGTTGAAAGTGATAGCAATTTTCAGCATATTAGTGACGAGTATGGTCGGCATTTGCCTACCAATCTTCTCCGGTGCGGTTCCTGCTCTTCAACCNGACGGAGACCTCTTCGTTCTCGTTAAGGCTTTCGCTTCGGGGGTTATACTCGCCACCGGTTACATGCACGTGATGCCAGATTCCTTCGACGACCTCACCTCGCAGTGCTTACCCGAACGACCCTGGCACAAATTCCCCTTCACTACCTTTGTTGCCATGCTCTCTGCTGTTTTTACCCTCATGGTCGATTCCTTCTCCATTAGCTTCTTCAAGAAAAAACTCTCTACATCTTCTTCTTCTAATGCCACTAACTTGGAAGCCCCACCTAATGCTGAGCCCAAGGAATTGGNACAAATTGGCCATGCTCATCATGGTCATGGTCTTGCACTTGCAAATGGACATGTGAAGAGCGTGAATGCAGAACAGTTGCTACGTTACCGCGTTGTGGCTCAGGTGTTGGAGCTAGGGATTGTGGTGCACTCGGTGGTGATTGGTTTGTCGATGGGAGCTTCGGAGAACCCCTGCACGATAAGGCCTCTCATTGCCGCACTTTGCTTCCATCAACTCTTCGAGGGAATGGGCCTCGGTGGTTGCATACTCCAGGCTGAATATGGACTCAAGGTGAAAGCGATTATGATTTTCTTTTTCTCCGCGACGACGCCGTTTGGGATCGCTTTGGGGATTGGTTTGTCGAATGTGTATAGCGACACAAGTCCAACTGCTCTGATTGTGGAGGGGATTCTAAACGCCGTATCTGCGGGGCTTCTGAACTATATGGCACTTGTTGATCTATTGGCTACCGATTTCATGGGGCCGAAGTTGCAAGGTAGAATGAAGCTTCAGGTTTGGTCATACGTGGCAGTTTTGTTAGGTGCAGGAGGCATGTCAGTGATGGCAATATGGGCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00839	58625	60162	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000839s00039835.1	PF02535.17	Zip	47	357	1.30E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.031
SRR1811619	moderate drought stress	0.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.099
DRR006520	Root Summer glycyrrhizin high producing strain	0.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.100
DRR006524	Root Summer glycyrrhizin low producing strain	0.101
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.727
SRR2868004	Drought Stress (root)	0.682
SRR2967015	Control (root)	0.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.435
SRR9715740	Leaf	0.029
SRR9715741	Leaf	0.422
SRR9715739	Root	1.522
SRR9715742	Root	0.972
SRR9715743	Root	1.073

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.028
SRR8749028	MeJA induced 9h	7.208
SRR8749029	MeJA induced 9h	1.918
SRR8749030	Uninduced	1.772
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.540

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.357
SRR8400027	Control - Root	0.533