Gene detail information of Glyur000839s00039832 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14960.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_004490325.1 | 0 | PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1-like [Cicer arietinum] |
| COG | YP_003444757.1 | 4.00E-16 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|O82333|GH31_ARATH | 0 | Probable indole-3-acetic acid-amido synthetase GH3.1 |
| trEMBL | tr|V7CL16|V7CL16_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29596.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00839 | 44985 | 47806 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000839s00039832.1 | PF03321.8 | GH3 | 21 | 550 | 9.10E-185 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.051 |
| SRR1783600 | control | 1.049 |
| SRR1783602 | moderate drought stress | 0.870 |
| SRR1811619 | moderate drought stress | 0.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.969 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.893 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.377 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.098 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.035 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.728 |
| SRR2868004 | Drought Stress (root) | 20.698 |
| SRR2967015 | Control (root) | 33.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.344 |
| SRR9715740 | Leaf | 6.955 |
| SRR9715741 | Leaf | 18.352 |
| SRR9715739 | Root | 36.542 |
| SRR9715742 | Root | 80.535 |
| SRR9715743 | Root | 67.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 682.007 |
| SRR8749028 | MeJA induced 9h | 1047.648 |
| SRR8749029 | MeJA induced 9h | 767.185 |
| SRR8749030 | Uninduced | 260.149 |
| SRR8749031 | Uninduced | 328.897 |
| SRR8749032 | Uninduced | 410.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.082 |
| SRR8400027 | Control - Root | 27.168 |