Gene detail

Gene detail information of Glyur000838s00028061.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04930.1	2.00E-04	DNA-binding storekeeper protein-related transcriptional regulator
NR	XP_006482084.1	1.50E-47	PREDICTED: uncharacterized protein LOC102616693 isoform X1 [Citrus sinensis]
trEMBL	tr\|A0A067EI76\|A0A067EI76_CITSI	7.00E-48	Uncharacterized protein {ECO:0000313\|EMBL:KDO53590.1}

Sequence

Transcript Sequence

>Glyur000838s00028061.1
ATGGACTCCACCCTTCGCAACCCCAAATCCAAATCCAAATCNAAGCTCCCAATCAAACGCAAAACCCAACAACTCCACCNCCACCCCAACAACAACATCGACATCAACAATCCTCCCCCCTTCAAGTTCCACCGAATCTGGACAGAATCAGACGAGATCGCGTTCCTCTCAGGTCTCCTCAACTCAAACCTCCTCTTCCCAAGAGACCTCAACCTCTTCTACAACCGTTTCTCAACCACCTCAACCCTCTCCCACCCTTACACCCACTCCCAACTCTCCGATAAGCTCCGCCGCCTCCGCAACAAGTTCCGCTCCGCCGCCACCACCACCACCCTCTCCCCACACGACCGCACACTCCACCACCTCTCCCAGAAACTCTGGAGCCCCCAATTCTCCCACACTTCTCCCTTCCGAACCTGTTCCAAGGTGGAGGAGGTCGCTGCTGCTCCGAACCCGAACCTGATGAACCCGAATCCGAAAGAANTCGTTCTTGACGTGTTTGATCGGTGCCTCAAAGAGGCCAAGATGGGTCTCTTTTGGCAATGGCAAGGGTTTATTCTCTCTCCTCTTACTTCTAACGGTGTGGAGAATTTTGGGAAGCGGTGGCAGGAGCAGCGAGCCTTGGAATTCGATGTGTTTGCCAGGCGTTTGAGATTGTGTAAATTCAACAATGGAGCAGAGAATTATGATAACTGGTTCACTTACGAAAGAATAGTACGTAAAGATTTCTCCTACTCCATCATACAGTCCTATAACTCCGTAAGCGCCCCACCTAGCCAAGCATCCCCTGCATCCACTTTGTTGTGCGAAATGGATACTTATCGTGCATACATGAAGTCGAATTATGAGCTGCAAACATCGTTCAAAAAATATACAGATGCCTACCCTAGGGTCCATTTTCTGGTTGGTGATGATGTGTCTATGACCGTTTATAATTTCAATAAATTAAGGATCTGGGCTAACAATCTTGCAACCCAAAGAGAAGACGAAATACATGTTGTGCATGCCGCAGCTGTTGGGCGTGTTACGATTGAAGAACCAGTAGTTTTGGACAGGCTGCAAGCCATCCAAAATGTGGTCGAGAGGTGGCCTTCTGGCCAAATCTGGGTTTGGAAGCTTTTGTTTCGAATTTACGGGGATGAAATTCATAATGTCGTCAATTTTGTTACTGAGTTTCGAATTTATAAACCTGAAGTCAGTCAAGGCGTGATGGACAATATTGAGATAGAAAGCTGGATGAATGAAGCAAGTGGTCTTCCTGAGGTGGTAGAAGATATATCTTTTGGTGTTGAAGATCAAGAATTTTGTGAGAGTATGGAAGAGCAACAACATGAATTTGAGAGTATGGAAGAGGAACAAGATGACTCTTATGGAATGGAAGAAAAAGAAATTGAATATGTCAGTATGGAAGAAGAAGAAAATGAGTATGGTAATATGGAATATGAAGAAGTAGAAGTAGAAGAAGAAGATGAACAAGAGGTTACCATTGATGGTGAGGAAATGTGCAAAGAGATCAATAATCAAATAGCTAATCATTTTGATCCAGAAAATGGTGCTACGATTGGAATTATGGAGAACAATGAATATCCACCGGTTCAAATTGATGAGCCTAAAGATGTTTTTCTTGGTCAAGTTGTGCATAGTAAAGAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00838	87103	94961	-

Gene family

Gene family	subfamily
Transcription Factors Family	GeBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000838s00028061.1	PF04504.9	DUF573	42	128	3.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.106
SRR1783600	control	7.132
SRR1783602	moderate drought stress	8.208
SRR1811619	moderate drought stress	8.175

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.729
DRR006520	Root Summer glycyrrhizin high producing strain	4.666
DRR006521	Root Winter glycyrrhizin high producing strain	2.150
DRR006522	Root Winter glycyrrhizin high producing strain	2.105
DRR006523	Root Summer glycyrrhizin low producing strain	5.907
DRR006524	Root Summer glycyrrhizin low producing strain	5.969
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.478
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.766

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.449
SRR2868004	Drought Stress (root)	6.092
SRR2967015	Control (root)	4.423

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.896
SRR9715740	Leaf	3.956
SRR9715741	Leaf	3.192
SRR9715739	Root	5.385
SRR9715742	Root	3.097
SRR9715743	Root	3.708

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.330
SRR8749028	MeJA induced 9h	5.240
SRR8749029	MeJA induced 9h	3.342
SRR8749030	Uninduced	2.321
SRR8749031	Uninduced	1.764
SRR8749032	Uninduced	2.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.244
SRR8400027	Control - Root	4.768