Gene detail

Gene detail information of Glyur000838s00028051.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38180.1	3.00E-123	FAR1-related sequence 5
NR	XP_003592163.1	0	Cysteine-rich receptor-like protein kinase [Medicago truncatula]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	4.00E-143	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|D5MNY6\|D5MNY6_SOLLC	0	Transposon-like element Lyt2-2 DNA {ECO:0000313\|EMBL:BAJ06702.1}

Sequence

Transcript Sequence

>Glyur000838s00028051.1
ATGGCAAGCAAGAGAGATAAGGGGTGCAATCAGGGAGGAGGCTTGGAAGGAGAAAGAGAGCAAAAACGATGGCAGAGGGGCGATGCAGATAAACAGAGGAATGGAGTTGCGGAAGAAGAATGGCATCACGCCTTGGCTAGGGTGAGCGACCTTGGCCAATCTCTCACTCTAGAGATGGTGGTTTCCGGCTACAGTGGTGGCACAGCGGAGCACACTTGCAGCCGGCGCGGTACTACTGCGGCAACACCAGTGGCCAAAACACCAGGAATTGACGGGTCCCGCTTGCGTAAAATGTCTGCTGGAAGTTTTGCAGCTCCGGTTGTTGGGGCTGGCTTTGAAGGTCTCATGTCCTTCGAAGTTAACAAACCCAACCCCATTTCGGATCTCCACTACCGAGATTCCCTCTTCCACCGTTCAAGCCTCAACAACATCGTTCACTCCCAACCACTCGTTGCCACTGTGTCTGCCGGGGAGAGGAACAACGAAGAAGAAGAAGAAGAAGAGCAAGTGCTGGTTTGTGGGTTGCATTTGCACGTTGTGCCAGTGGATTTTGTTGTTTCTGTACAAGATGATGCCTTATTCGCTTCCTTAGTATGTGACAGCCATTACTGGGCCCATGCCAGACTCGCCAGGCCTCAAACTCAAGGAGGGGCTCATCGTGAACAGGAAAAGAAGCTTCTGGAAGGTGAGGTGGAGCTCATGGAGATCGGAATGAAGCTTAGGCCATTGCTGAGCATGGAGATGACGGAACGACCTCTTCTTCTTTTCAAAGGTTGGCTACCTCTTTTGTCAGACCGCGGTGGCTCTGCGGCGAGACTTGGGAGGGTCTCTCACCCTAGAAGCCACCTTGTTGCTGTCAAAGTGGGTGGTCTTCTTGTTCTTGCAACAACTTCTCTGTATTTTATTACTGTGGAAGAATTAGGAGAGTTGAACATAAAAACGCATTCGGTGAGATGTTGTTTGGGTGCGAAACTCCACATAGAATCTCTGATATTTGGTTGGCAGCATGAGGGGGCGACCACTCTGAAGACAAATCTTACTCATTTAAAGGACTGGTTACGGCTTGCACTTTCCATTCATCTTGAAGCCAATTATTGGTCACGGTGGTCAGGTAATAGCTGGGAGAAAATTGCTTTTAGTCTAGGTATGACAGAGGTGCATGAAGATTCCACCATGGTTAGCTCTAATAATATACTTAAAAGTGCTCCTGATGTGGATCTTCACAATTTTGGACTACCATTAGAGCCCCCCTTAGAGCCTTTTGAAGGAATGGATTTCACATCAATTGAAGATGCAAAAAATTACTACACCAGGTATGCAAAGAACAAGGGTTTTACCTTTCGCATGGGTCGTGTTACTAAATCAAGAACAAATGGTATGATAATTGGTCAAGAGATGCTTTGTTCAAAGGAGGGGTATCGGGCAAAAAAATATGTGAAAAGGGAAAATAGTAACCTTGCATTACATGATGAAACAAGGGTAGGATGCAAGGCAAAGATATATTTAAAGAAAAACGAAGATAGATGGATTATTTCAAGATTTGTAGGAGAGCATAATCATGAACTGCTTTCCCCTCGAAGTTTACAGTTTCTTCGAGTGCATAGAAAGAAAAATAAAGCGCAAAAAAAACTTAATGATATGCTTGATGATTCTGGTTTGGGCCCTAGCAAAATAACATCTCTCTTATGTACTGAAAGTGGTGGTGTTGATAATGTTGGATTTAGTCAACAAGATGTTATTAATTACTTAAGTGCAAAGAGACAAAAGCAATTAGAAAAAGGAGATGCTCAGTTGATGTTATCATACTTTAAGAATTGTCAATTGAAGAATATTGGATTTTTTTATGCATTTCAAATGGATGCAGAAGGACAATTAGCAAATTGTTTTTGGGTTGATTCAAGGTCTAGAATGGCTTACAAATATTTTGGTGATGCGGTGACTTTTGATCCAACATATTTGACAAATAAATACAAAGTGCCTTTTGTTCCATTCACTGGAGTTAATCATCATCAACAATCCATTCTTTTTGGTTGTGGTCTGTTATGGGATGAAAGTGAAGAGAGTTTTGTTTGGTTGTTAAGTACATGGTTAGAAGCAATGTCTGGAGTTTGTCCTAAAACTATTATCACGGACCAAGATGTTGCTATTACCAATGCAGTTGCAAGGGTGTTTCCAGAGGTTAATCATCATTATTGTATGTGGCACATTGAGGAAAAAGTTCCAGAGTCCTTGAACTATATTTATCATGAACATAGTGAATTTGAAAGTCAATTTTACAAGTGCATTCACCAATCTTTCACTGTTGAAGAATTTGAATCTGATTGGAAATCAATGATAGATAGATATGGGTTGCAAGATAACCAGTGGCTAGAGAAGATGTACTCTATTCGAGCAAAATGTATTCTAGCTTATGTACGTCAGAATTTTTGTGCCGGAATGTCCACCATGCAAAGGAGTGAAAGTATGAATAAGTTCTTTAAGGATTTTTTGAATTCGAGTACTCCATTGAGCAAGTTTGTGGCACAATATGAGAAGGCTCTCGATGCACGTTATAACAAGGAAAGAGAGAAGACTTTTAAGACAATGAATTCAAAGCCACTAATGCGAACTTTATATCCCATGGAAGAAGAAGCTTCAAAAATCTATACAAGAAAACTGTTTAGGATGTTTCAGGATGAGTTGGTTGGCTCTCAAATGTTTATTGCGGAGAAAGTTGAATTTGCCACTGAAGTGTCCATATACAAGTATATTTTACGCCGATGGACCATTAATGCTAAGAAAGAGAAAGTTAAAGGATTGACAAGTGAAGAATTCCAGGAAGGCAACAACAAATCTTCTAGTACTATATTGTTTAACAGTGTTATGGTTCAATCTCTTGAACTATCTGAAAGAGCTTCACGATCAGAAAAGCATCATGATATTGCAATTCAAGGTTTGCAGAAGTTAATTGGAGAACTTGATCTATTGGAGATTGAAGAGTCAAAGGAAGAATTTGGTAATTCGACATCCGAAGATATGCCCAAGTCTCCAAGAATGCTATAA

Protein Sequence

>Glyur000838s00028051.1
MASKRDKGCNQGGGLEGEREQKRWQRGDADKQRNGVAEEEWHHALARVSDLGQSLTLEMVVSGYSGGTAEHTCSRRGTTAATPVAKTPGIDGSRLRKMSAGSFAAPVVGAGFEGLMSFEVNKPNPISDLHYRDSLFHRSSLNNIVHSQPLVATVSAGERNNEEEEEEEQVLVCGLHLHVVPVDFVVSVQDDALFASLVCDSHYWAHARLARPQTQGGAHREQEKKLLEGEVELMEIGMKLRPLLSMEMTERPLLLFKGWLPLLSDRGGSAARLGRVSHPRSHLVAVKVGGLLVLATTSLYFITVEELGELNIKTHSVRCCLGAKLHIESLIFGWQHEGATTLKTNLTHLKDWLRLALSIHLEANYWSRWSGNSWEKIAFSLGMTEVHEDSTMVSSNNILKSAPDVDLHNFGLPLEPPLEPFEGMDFTSIEDAKNYYTRYAKNKGFTFRMGRVTKSRTNGMIIGQEMLCSKEGYRAKKYVKRENSNLALHDETRVGCKAKIYLKKNEDRWIISRFVGEHNHELLSPRSLQFLRVHRKKNKAQKKLNDMLDDSGLGPSKITSLLCTESGGVDNVGFSQQDVINYLSAKRQKQLEKGDAQLMLSYFKNCQLKNIGFFYAFQMDAEGQLANCFWVDSRSRMAYKYFGDAVTFDPTYLTNKYKVPFVPFTGVNHHQQSILFGCGLLWDESEESFVWLLSTWLEAMSGVCPKTIITDQDVAITNAVARVFPEVNHHYCMWHIEEKVPESLNYIYHEHSEFESQFYKCIHQSFTVEEFESDWKSMIDRYGLQDNQWLEKMYSIRAKCILAYVRQNFCAGMSTMQRSESMNKFFKDFLNSSTPLSKFVAQYEKALDARYNKEREKTFKTMNSKPLMRTLYPMEEEASKIYTRKLFRMFQDELVGSQMFIAEKVEFATEVSIYKYILRRWTINAKKEKVKGLTSEEFQEGNNKSSSTILFNSVMVQSLELSERASRSEKHHDIAIQGLQKLIGELDLLEIEESKEEFGNSTSEDMPKSPRML

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00838	6238	18678	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000838s00028051.1	PF03101.10	FAR1	434	523	1.30E-19
Glyur000838s00028051.1	PF10551.4	MULE	651	740	3.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.103
SRR1783600	control	2.184
SRR1783602	moderate drought stress	2.037
SRR1811619	moderate drought stress	2.060

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.470
DRR006520	Root Summer glycyrrhizin high producing strain	2.575
DRR006521	Root Winter glycyrrhizin high producing strain	1.688
DRR006522	Root Winter glycyrrhizin high producing strain	1.748
DRR006523	Root Summer glycyrrhizin low producing strain	2.064
DRR006524	Root Summer glycyrrhizin low producing strain	2.201
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.730
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.923

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.973
SRR2868004	Drought Stress (root)	4.242
SRR2967015	Control (root)	3.911

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.854
SRR9715740	Leaf	1.596
SRR9715741	Leaf	1.319
SRR9715739	Root	0.451
SRR9715742	Root	1.205
SRR9715743	Root	1.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.467
SRR8749028	MeJA induced 9h	3.239
SRR8749029	MeJA induced 9h	0.991
SRR8749030	Uninduced	0.744
SRR8749031	Uninduced	0.543
SRR8749032	Uninduced	0.589

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.962
SRR8400027	Control - Root	3.272