Gene detail information of Glyur000837s00027497 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14465.1 | 4.00E-58 | AT-hook motif nuclear-localized protein 20 |
| NR | XP_007144108.1 | 1.68E-144 | hypothetical protein PHAVU_007G129400g, partial [Phaseolus vulgaris] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 1.00E-47 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|V7BE43|V7BE43_PHAVU | 6.00E-145 | Uncharacterized protein {ECO:0000313|EMBL:ESW16102.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00837 | 97539 | 98720 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000837s00027497.1 | PF03479.10 | DUF296 | 105 | 221 | 3.50E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 209.823 |
| SRR1783600 | control | 212.298 |
| SRR1783602 | moderate drought stress | 197.779 |
| SRR1811619 | moderate drought stress | 200.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 238.986 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 238.271 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 82.883 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 81.721 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 252.897 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 254.318 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 353.106 |
| SRR2868004 | Drought Stress (root) | 438.875 |
| SRR2967015 | Control (root) | 447.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.219 |
| SRR9715740 | Leaf | 0.346 |
| SRR9715741 | Leaf | 0.173 |
| SRR9715739 | Root | 301.671 |
| SRR9715742 | Root | 186.407 |
| SRR9715743 | Root | 199.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 122.659 |
| SRR8749028 | MeJA induced 9h | 83.113 |
| SRR8749029 | MeJA induced 9h | 73.381 |
| SRR8749030 | Uninduced | 47.065 |
| SRR8749031 | Uninduced | 19.848 |
| SRR8749032 | Uninduced | 46.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 310.214 |
| SRR8400027 | Control - Root | 283.119 |