Gene detail

Gene detail information of Glyur000837s00027488

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23510.1	0	Cyclopropane-fatty-acyl-phospholipid synthase
NR	XP_004495453.1	0	PREDICTED: uncharacterized protein LOC101501999 [Cicer arietinum]
COG	YP_002298233.1	2.00E-97	NAD/FAD-binding protein [Rhodospirillum centenum SW]
Swissprot	tr\|Q94IG7\|PPOCM_SPIOL	4.00E-08	Protoporphyrinogen oxidase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A072VM29\|A0A072VM29_MEDTR	0	Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313\|EMBL:KEH42686.1}

Sequence

Transcript Sequence

>Glyur000837s00027488.1
CTCTTCACTCACTTATGTGGACCGTTGAGTTCCACGGATGACGAGTTCATTCGAGTACCCTCATTATTAAAGACTTTTTGGGTTCTGTTCTGTCCACATTCACACATTGCTAGCTGCTTGCTGCAGAATAAAGGGAAGGAAGAAAAGTTGAATCTTTTGGATTCTCATTACATAAGCAAAGATGAGGATTGCAGTGGTTGGTGCTGGGATTAGTGGGTTGGTCTCAGCTTATGTTTTGGCCAAAGGTGGAGTGAATGTGGTGTTGTATGAGAAGGAGGACTACTTGGGAGGACATGCCAAAACTGTTAATGCTGATGGTGTTGATTTGGACCTTGGCTTCATGGTCTTCAACCGGGTCACTTATCCCAATATGATGGAATTCTTTGAGAGTCTTGGAATTGATATGGAGTTATCAGACATGTCATTTTCTGTCAGCCTAGACAAAGGCCGTGGCTGCGAATGGGGTAGCAGAAATGGTTTCTCCGGCTTGTTTGCACAGAAGAGAAATGTACTTAATCCTTACTTCTGGCAAATGATTAGGGAAATTATCAAGTTCAAAGATGATGTTATAAGCTATCTTGATATGCTTGAGAATAACCCACATATTGACCGCAATGAGTCTCTGGGGCAATTCATCAAGTCAAGGGGTTACTCAGAATTATTTCAGAAAGCCTATCTTATTCCAATATGTGGTTCTATTTGGTCCTGCTCTTCTGAAGGAGTTATGAGCTTTTCAGCTTTCTCAGTTCTCTCTTTTTGTCGCAATCACCATATACTTCAGCTCTTTGGCAGACCACAATGGCTAACTGTCAGATCACGCTCACAGAATTATGTTAAGAAGGTTAAAGAAGAGATTGAGAATAATGGTAGTCAAATAATAGCTAATTGTGAGGTGCACTTGGTTTCAACATCTGAAAAAGGATGTGTTGTGTACTGCAAAGATGGTTCTCAAGAAATGTATGATGGATGCATAATAGCAGCACATGCACCTGACGCTTTGAGACTGTTAGGAGATGAAGCAACATATGATGAGCGAAGAATTCTTGGTGCTTTTCAATATGCATACAGTGATATTTTTCTTCATCGTGATAAAAATTTGATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTGGAAGTAACAACAACAGAGTTTGTTTGACATACTGGTTAAATATTCTTCAGAATATTGAAGAAGCAAGTCAACCCTTTCTTGTAACTCTGAATCCAGATGATATACCAGAAAATACCTTGCTTAAGTGGTCAACTGGTCATCCAATCCCATCAGTTGCTGCATTCAAAGCTTCACAAGAGCTAGATCATATTCAAGGGAAAAGAAGAATCTGGTTTTCTGGGGCCTACCAAGGTTATGGATTTCACGAAGATGGATTAAAGGCTGGCATGATTGCAGCTCATGGCATTCTTGGAAAATGTTGTGCCCTTCAGACCAACCCAAAACACATGGAAGGAGGAACAATGTTTACCTTTGAGGGAAATGAGAAAAAGTGTTTTTTGAAGTGTGTTTTGAGAGTCCACAATCCCCAATTTTACTGGAAGGTTCTCATAGCCAACAGAGATTTAAATGCATCCAACTCAAAACTGAAGAAGCATAGGGGTTGGTGGACACCACTTTTATTTACGTCTGGTTTGGCATCTGCGAAGTTCTTCATGGAGCATGTCTNGAGGAAAAACACTCTCACACAGGCTCGCAGAAACATTTCTAGGCATTACGATCTGAGTAATGAACTCTTTGCACTTTTCTTGGATGAAACTATGACATATTCATGTGCAAATAAAGATGAGGACTTGAAAGATGCACAAATGAGAAAAGTATCTCTTCTGATTGAAAAAGCTAGAATAGAGAGGAAACATGAAATTCTTGAGATTGGATTTGGATGGGGAAGTTTAGCCATTGAAGTTGTCAAACAAACTGGTTGCAAATACACTGGTATCACTTTGTCTAAGGAGCAANTGAACCTTGCGGAAAAAAGAGTCAAAGATGCCGGGCTTCAGGACCATATCAGCTTTCTCCTTGAAATGATAGAAGCTGTTGGCCATGATTACATGAAAGAATTCTTTGGTTGTTGTGAATCATTATTGGCAGAAGATGGACTTCTTGTTCTCCAGTTCATATCAATCCCGGATGAGCGTTATGATGAGTACAGGCGCAGTTCTGATTTTATAAAGGAATATATTTTTCCTGGAGGTTGCCTACCCTGTCTAAGTAGCATAACATCAGCCATGGCAGCCACATCCAGACTTTGCGTGGAGCACACTGAAAACATAGGAATTCATTACTATCAAACACTAAGATTGTGGAGGAAAAACTTCATGGAAAGGCAGAGTGAAATTTTGGCTCTTGGATTCAATGAAAAGTTCATCAGAACATGGGAATACTATTTTGATTACTGTGGTGCGGGTTTCAAGTCACGCACACTTGGGGATTATCAGGTGGTTTTCTCACGCCCAGGTAACGTTACTGCATTCAGCGATCCATACAAACGCTGAGCCTAATTAAGCATGTCGATTTATCTTTCACGGGAGACCACATGCCTCATCACGCATTCCAGAATAAATACATTGACATGTTGATGCCATGTAAATCATTTCTTGAAAATCCCAAAATTTCTTTGTTGTCATTGTTTATCTGTTGAACAACATTGAATTGTAAGAGCTGAATTGTGCTGCTTGGGAGTGGCGAAAGGCTCTGCTAGATTGGTGAGATTTTTTTCTCGTAAGAAAATGGTGTATTTTTTAAATTGGAGTGAGTTTATATATATGTGACAAGGAGCCAACTTTTTTTTTTGGAAGAAAAGATGTATTTTAATTGGGAACACTTAATCCACCCATTCTAATGTCGACCGAACTCAGAAGATATATATTGCTACTGAAGATGGAATTTCACAACGGCAACTAATACTTCTTCATTGTCAACATTCATGCCTTTTATGGACAAAAGCAACTTTTCATGCCGCCTTGCAATATCTCAAAGACAAAGTGACTCTCGCAAAATAGATTTGTTCATGTTTGGGGGAAATTTCACACCGTAAGTGTGATTACGTCATACATGCATTTGTATCTCTAATATAGTTGTTAATTATACTTGTGATTGTTTCCACACCCCAGTTAAGTTTATTTTGGAAAAAAANAATCTATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00837	1570	11421	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008610 lipid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000837s00027488.1	PF13450.1	NAD_binding_8	5	71	2.80E-17
Glyur000837s00027488.1	PF02353.15	CMAS	508	755	2.60E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.375
SRR1783600	control	0.368
SRR1783602	moderate drought stress	0.252
SRR1811619	moderate drought stress	0.221

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.428
DRR006520	Root Summer glycyrrhizin high producing strain	0.390
DRR006521	Root Winter glycyrrhizin high producing strain	0.430
DRR006522	Root Winter glycyrrhizin high producing strain	0.386
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.182
SRR2868004	Drought Stress (root)	4.865
SRR2967015	Control (root)	2.040

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.717
SRR9715740	Leaf	40.236
SRR9715741	Leaf	16.875
SRR9715739	Root	0.086
SRR9715742	Root	0.261
SRR9715743	Root	0.129

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.253
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.043
SRR8749030	Uninduced	0.145
SRR8749031	Uninduced	0.151
SRR8749032	Uninduced	0.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.168
SRR8400027	Control - Root	2.366