Gene detail information of Glyur000836s00028097 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12090.1 | 1.00E-61 | tetraspanin6 |
| NR | XP_003518112.1 | 9.28E-95 | PREDICTED: tetraspanin-6-like [Glycine max] |
| Swissprot | tr|Q9C7C1|TET6_ARATH | 2.00E-86 | Tetraspanin-6 |
| trEMBL | tr|I1JCX0|I1JCX0_SOYBN | 3.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G07090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00836 | 111419 | 111913 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000836s00028097.1 | PF00335.15 | Tetraspannin | 5 | 158 | 1.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.121 |
| SRR1783600 | control | 2.436 |
| SRR1783602 | moderate drought stress | 1.795 |
| SRR1811619 | moderate drought stress | 2.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.717 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.373 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.813 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.170 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.162 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.012 |
| SRR2868004 | Drought Stress (root) | 5.189 |
| SRR2967015 | Control (root) | 7.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.638 |
| SRR9715740 | Leaf | 4.781 |
| SRR9715741 | Leaf | 8.573 |
| SRR9715739 | Root | 0.648 |
| SRR9715742 | Root | 4.043 |
| SRR9715743 | Root | 2.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.237 |
| SRR8400027 | Control - Root | 2.115 |