Gene detail information of Glyur000836s00028089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55510.1 | 9.00E-151 | Noc2p family |
| NR | XP_006601032.1 | 0 | PREDICTED: nucleolar complex protein 2 homolog [Glycine max] |
| Swissprot | tr|Q9ZPV5|NOC2L_ARATH | 3.00E-114 | Nucleolar complex protein 2 homolog |
| trEMBL | tr|K7MMG2|K7MMG2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G23890.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00836 | 28888 | 39361 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000836s00028089.1 | PF03715.8 | Noc2 | 380 | 673 | 5.10E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.320 |
| SRR1783600 | control | 4.361 |
| SRR1783602 | moderate drought stress | 4.885 |
| SRR1811619 | moderate drought stress | 4.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.337 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.197 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.305 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.184 |
| SRR2868004 | Drought Stress (root) | 14.604 |
| SRR2967015 | Control (root) | 14.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.648 |
| SRR9715740 | Leaf | 13.537 |
| SRR9715741 | Leaf | 12.060 |
| SRR9715739 | Root | 1.219 |
| SRR9715742 | Root | 5.360 |
| SRR9715743 | Root | 3.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.742 |
| SRR8749028 | MeJA induced 9h | 33.341 |
| SRR8749029 | MeJA induced 9h | 18.528 |
| SRR8749030 | Uninduced | 11.253 |
| SRR8749031 | Uninduced | 6.462 |
| SRR8749032 | Uninduced | 5.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.677 |
| SRR8400027 | Control - Root | 16.156 |