Gene detail information of Glyur000836s00028087 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52290.1 | 5.00E-05 | IQ-domain 3 |
| NR | XP_004489843.1 | 2.87E-25 | PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 4.00E-87 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|A0A061FNA8|A0A061FNA8_THECC | 2.00E-25 | IQ-domain 3 isoform 2 {ECO:0000313|EMBL:EOY18556.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00836 | 19022 | 27230 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000836s00028087.2 | PF00612.22 | IQ | 112 | 130 | 2.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.496 |
| SRR1783600 | control | 0.403 |
| SRR1783602 | moderate drought stress | 0.460 |
| SRR1811619 | moderate drought stress | 0.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.640 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.013 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.997 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.822 |
| SRR2868004 | Drought Stress (root) | 15.465 |
| SRR2967015 | Control (root) | 17.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.012 |
| SRR9715740 | Leaf | 13.178 |
| SRR9715741 | Leaf | 24.103 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.660 |
| SRR9715743 | Root | 0.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.414 |
| SRR8749028 | MeJA induced 9h | 3.834 |
| SRR8749029 | MeJA induced 9h | 1.739 |
| SRR8749030 | Uninduced | 3.622 |
| SRR8749031 | Uninduced | 1.822 |
| SRR8749032 | Uninduced | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.614 |
| SRR8400027 | Control - Root | 4.193 |