Gene detail

Gene detail information of Glyur000833s00030504.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43860.1	3.00E-87	chlorophyllase 2
NR	XP_007145911.1	2.00E-153	hypothetical protein PHAVU_007G278100g [Phaseolus vulgaris]
COG	YP_003200998.1	6.00E-13	chlorophyllase [Nakamurella multipartita DSM 44233]
Swissprot	tr\|Q9M7I7\|CLH2_ARATH	1.00E-114	Chlorophyllase-2, chloroplastic (Precursor)
trEMBL	tr\|V7BLH8\|V7BLH8_PHAVU	7.00E-154	Uncharacterized protein {ECO:0000313\|EMBL:ESW17905.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00833	88399	93259	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08099	E3.1.1.14	EC:3.1.1.14	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0015996 chlorophyll catabolic process

GO:0016042 lipid catabolic process

molecular_function

GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity

GO:0047746 chlorophyllase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000833s00030504.1	PF03403.8	PAF-AH_p_II	48	87	3.40E-05
Glyur000833s00030504.1	PF12740.2	Chlorophyllase2	89	253	3.60E-75

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.812
SRR1783600	control	2.008
SRR1783602	moderate drought stress	1.306
SRR1811619	moderate drought stress	1.288

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.898
DRR006520	Root Summer glycyrrhizin high producing strain	2.129
DRR006521	Root Winter glycyrrhizin high producing strain	1.067
DRR006522	Root Winter glycyrrhizin high producing strain	1.111
DRR006523	Root Summer glycyrrhizin low producing strain	0.806
DRR006524	Root Summer glycyrrhizin low producing strain	0.845
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.725
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.526

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.898
SRR2868004	Drought Stress (root)	0.624
SRR2967015	Control (root)	0.606

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.885
SRR9715740	Leaf	23.178
SRR9715741	Leaf	14.604
SRR9715739	Root	0.043
SRR9715742	Root	0.406
SRR9715743	Root	0.902

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.797
SRR8749028	MeJA induced 9h	0.038
SRR8749029	MeJA induced 9h	0.294
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.081
SRR8749032	Uninduced	0.060

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.933
SRR8400027	Control - Root	0.974