Gene detail

Gene detail information of Glyur000831s00034078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50570.2	2.00E-36	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
NR	AGJ83724.1	0	squamosa promoter-binding 16-like protein [Caragana korshinskii]
Swissprot	tr\|Q0J0K1\|SPL18_ORYSJ	6.00E-44	Squamosa promoter-binding-like protein 18
trEMBL	tr\|R9R669\|R9R669_9FABA	0	Squamosa promoter-binding 16-like protein {ECO:0000313\|EMBL:AGJ83724.1}

Sequence

Transcript Sequence

>Glyur000831s00034078.1
CTTTATCTACTCCCTCAGAGAGAAAACGTCAAACATGGGTCCTGCGGCTTCTCTCTCTACCCATTGTCTTGGAGGCTCATCTGAAGCTTCTGTGAGAATTTCAGGAGATTTTTAACTCTTAGAATACTGCTACGTCTGTTAGGTTTGGCATATTTAAAAGGACCTAAAGGAACAAACACAGTGTGTGTGTGTGTGTGTGAGGAAGTAGCAATTAAGTGGGGCATGGATTGGGACTGGAAGGAGTTTGCTTGGGATTCATGTGAGTTGGAACTAGGCTTGGAAGTGCAGAANAATGAAGCAGTAGCAGAAGCAGAAGCTTCAGTTGATTTGAGGCTTGGTGGTGAGGTTTCTTCTGATTCTGTGGAGAAATCAACCCCAGATACTCCTAAAGACTCAAAAGCTGTGTCATCATCACCACCTTCTTCGGGGTCATCAAAAAGATCCCGTCTTCAAAATGGATCACAGAATTTCTCTTGTTTGGTTGATGGATGTGACTCTGACCTCGGTGATTGTAGGGAGTATCATAGGCGTCACAGGGTCTGTGAAAAGCACTCCAAAACCCCAGTTGTGCTTGTAGGGGGAAAGCAGCAAAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCAGTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGGCATAATAGGCGCAGGAGGAAACCTCAGCCATCTTCTCTCTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCACTTTGGTAGCCCTCAGGGATACATGAACCCTATCATGAGAAACATGTGGCCTTCCACTAACAAAACTGAAGCTGAATCTGGTTATGATCACCACAGACTTCTGTATAGAATTGAGAGTAACAAGCATAAGCAGGATAAGGGACATCCTCTTTGGCAAGAAAANGGCCCCAAAACTGGTATTTGCAATGAGTCAGCACCTCGAACTCCCATCTCTCAGCCGATTCTTGGTTCCATTGCCCCGTCAACAGGTGGAAAGGGCAATAGGAAGCTCTCTCCAGNTAGCAAGCCTGGATCTTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAAATCTTCAAACACAAAGTTCTTCTGAGTTGGGTTCGATGCAGTCCAGCATCAACTGTCCAACACAGTCTCCGTCATCAGGAGCTGTGCATTTTGATGCAGCAAACACAACCAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTGATGGATTGAATATGGAGAATGAGGACTCACTCACACTTCCCATTTTCTGGGAGTAGGTGTGTATGCACCTGAGTGGTTTGGTCCTTGTTGGTCTTCAAAACATTATCTGTGTACCATCAAATAATAAAAGCTTAGACTTGTTGAAGCTTTTTCAGTAAGGGTACATTTTTTTCCCTGTCAATTCAGAGTGTTGTAACACAACTGATTTTGCTGCAGGTGATGAAATCGATTATCTGCCATCAACTATATATTCTTTCTGTTGTCGTGAAATCAATTTGAACAGTTCAAGACNTATTTGCTTAATTTAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00831	105650	108701	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000831s00034078.1	PF03110.9	SBP	85	161	2.00E-37
Glyur000831s00034078.2	PF03110.9	SBP	85	161	2.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.781
SRR1783600	control	26.736
SRR1783602	moderate drought stress	33.953
SRR1811619	moderate drought stress	33.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.078
DRR006520	Root Summer glycyrrhizin high producing strain	29.880
DRR006521	Root Winter glycyrrhizin high producing strain	3.183
DRR006522	Root Winter glycyrrhizin high producing strain	3.198
DRR006523	Root Summer glycyrrhizin low producing strain	7.474
DRR006524	Root Summer glycyrrhizin low producing strain	7.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.944

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.520
SRR2868004	Drought Stress (root)	27.200
SRR2967015	Control (root)	26.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.922
SRR9715740	Leaf	20.678
SRR9715741	Leaf	9.443
SRR9715739	Root	4.964
SRR9715742	Root	10.628
SRR9715743	Root	9.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.238
SRR8749028	MeJA induced 9h	3.674
SRR8749029	MeJA induced 9h	2.563
SRR8749030	Uninduced	2.260
SRR8749031	Uninduced	1.960
SRR8749032	Uninduced	1.469

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.414
SRR8400027	Control - Root	28.468