Gene detail

Gene detail information of Glyur000830s00028260

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27180.1	0	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_004509915.1	0	PREDICTED: TMV resistance protein N-like isoform X2 [Cicer arietinum]
COG	YP_007098670.1	3.00E-44	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-67	TMV resistance protein N
trEMBL	tr\|V5UP77\|V5UP77_CICAR	0	TIR-NBS-LRR disease resistance protein {ECO:0000313\|EMBL:AHB79185.1}

Sequence

Transcript Sequence

>Glyur000830s00028260.1
ATGTCGTCGTCGCCGGGGAGTGACGTGGCTCCAGGAGGAGGTTTCAGGCTCCGATGGGACGTGTTTTTGAGCTTCAGGGGAGAGGACACGCGCGAGAGCTTCACNAAGAGCCTGTACGAGTCGCTGCAGAGCGTGGGTGTACGCGCCTTCATGGACGACGAGGGGTTGGAGCGTGGCGACGAGATAGCGCCGAGCCTTATAGAAGCCATTCATGACTCCGCTGCNTCCATTGTGATCCTCTCTCCTCGCTACGCCGACTCTCACTGGTGTCTCGAGGAGCTCGCCACCATCTGCCACTGTCGCAGGCTCCTCATACCCGTTTTCTACCGGGTCGACCCGTCTCACGTGCGCAAACAAGCCGGTCCATTCGAACCGGGTTTCAGGTCCCATGAAGTGAGGTTCGCGCAACAGAGAGAGAAGATCTCTAGGTGGAGGGAAGCAATTGATGATGGGCACGAAAATCTGATTCGCCGTTTGGTGCAAAGGGTGTTGAAGGAGTTGAGTAACACCCCAATGGTTGTGGGTGAGTTTGCGGTGGGGCTTGATGGACGTGTTGAGAAGGTGACGGAGCTGTTACAGGTTCAATCCAATGGTGTCAGGTTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTCGCCAAGGCTCTCTTCAATAGCCTCGTTCGCCATTTTGACCGTCGATGCTTCGTTTCAGATGTGAGGCAAGTGTCATCTAAAGAGGACGGTTTGGTTTCTCTTCAGAACAAAATCATTAACGATCTTGTTGATCCTAAAGAAGATGCTCGGGGTCTCACCACCATCACTGATGTCAACGCTGGTCTTTCTGCTATCAAACGAATAGTTCATGAAAATCGAGTGTTGCTAGTGTTGGATGATGTTGATGATGTAAACCAACTTGACACTTTGATTGGTAAGAGGGAATGGTTTTATGAAGGAAGCCGCATAGTAATCACCACAAGGGATACACGTGTTTTTATGCACAAGAGTCATCATGTCATTGTCAATGAGAATGAATTGTATGAGGTTAAGGAATTGTACCCTGAAGAAGCTCTAGAGTTATTCAAAAAGTGCTTGATCAAAATAACTCTTGAAAATACCCTGTCGATGCATGACCAAATTAGAGATATGGGAAGACAGATTGTTCTAGATGAGAACCATGGAACAAGATGCATTCAAGGAATTGTACTAGACTTTAAGGAACAAACCAAACAAAGGAATACGAATTTTCTTCAACCTCAAGCAGAGAAAAACAACGAGGTTATACTTTATACAAAATCCTTTGAACCAATGGTTAACCTGAGATTGCTTGAGATCAATAATCTGAGATTGGAAGGCCAGTGTCTTCCAGCTGAACTGAAGTGGCTNCAATGGCGAGGATGTCCTTTNGAATGCATGCCTTTGGACCCTTGGCCTCGAGAGCTGGCTGTCCTTGATCTCTCAAACAGCCACAAAATGAAAAAATTGTGGGGATGGGAAGGTTACAAGGTACCAGAGAACCTAATGGTTATGAACCTCTCCAACTGCTTCCAGCTTGCTGCAATCCCTGATTTATCTGGGTGTCTCCGTCTAGAGAAGATTAATTTGGAGAACTGCATTAATCTAACTAGGATTCACGAATCAATTGGCAGTTTGACTACCCTGCGTAGTTTGAATTTGACACTTTGTTCAAAGCTCATTGGCATTCCCATTGATGTATCTGGGCTGAAACATCTAGAGAGCCTCATTCTTTCCAGATGCTCCAAGTTGAAAGCTTTACCAGAAAACATAGGCATCCTTGAATCTCTGAAAACACTTCTTGTTGATAACACAGCTATAGTAGAGCTGCCCCAGTCAATTTTTTGCCTGACCAAACTTGAACGGCTAGTTTTAGATGGTTGCTCATATTTGAGAAGGCTACCAAACTGCATTGGACATCTGTGTTCTTTGCAAGAATTATCTCTTAATCAGTCTGGATTAGAAGAATTGCCCAACTCTGTTGGATCCTTGAAAAACCTTGAGAAATTCAGTTTGATTCGGTGTGAATCTCTCACTGTAATTCCTGATTCTATAGGAAATCTCATATCGTTGACAGAACTTTGGGTTGGTAACAGTGGAATCAAGGAACTCCCTTCTACCATTGGTTCTTTGTCCTATCTGATGGAGTTATCAGTTGGAAACTGCAAACTTCTCAGTAAATTGCCTGACTCNATTAAAACTCTGGCCTCACTCATTGAACTTCAGTTAGATGGAACAAGCATCACAAATTTGCCAGATCAGATTGGTGATATGAAACAACTGAGGAGGCTTGAGATTGGGAATTGCAGCCATCTTGAATCATTACCAGAATCCATTGGCCACCTATCATCTCTTACTAGACTGAACATATTCAATGGAAATATCAGGGAATTGCCAGAGTCCATTGGATTACTGGAAAATCTTGTCACCTTAAGATTGAACAAATGTAGAATGCTCAGAAAGCTTCCAGCATCTATAGGAAANTTGAAATCTCTATGTCACTTTCATATGGAGGAAACAGCTATGTCAGACTTGCCTAAAAGTTTTGGGATGCTCTCAAGTTTGAGAACATTGAGAATGGCAAAGAGGCCTCATTTAGTTCCCACTGAAAATGCAAAAGCTGAAGAAACAACTTTTGTGCTACCATCTTCCTTCTGCAATCTGATCTTGCTCTATGAGCTGGATGCCCGTGCCTGGAGAATATCTGGGAAAATCCCAGACGATTTTGAGAAGTTGTCATCATTAGAGACTTTGAATTTGGGTCAAAACAATTTCCACAGCCTTCCTTCCAGCTTGAAGGGCCTTTCCATTCTCAAGAAGCTTTCACTCCCAAACTGCAGGGAGCTGATCTCTCTCCCCTCACTTCCTTCATGCTTGACTGAGCTGAACGTTGAGAACTGTTCTGCACTAGAAACCATCCACGATATGTCAAATCTAGAGAGTTTGCAGGAGTTGAATCTCACAAATTGTGAGAAAGTGGTGGATATTCCAGGTCTTGAATGCTTCAAGTCCTTGAGAAGGTTATTCCTGAATGGTTGCATTGCATGCTCCTCTCAAATACCTAATAGACTTTCAAAGGTTGCATTGAGGAATTTAGAGAACTTGAGCATGCCTGGAACCAGATTACCTGAATGGTTTTCAGGACAAATTGTCAGCTTTTCCAAGCCCAAAAATCTTGAGCTGACAAGTGTAATTATAGGTGTTGTTTTCTCAATTAACCATAACATTGATATACCTAATATAAGTAGAAATGAAATGCCTGGAGTGATTGATCTTCAAGCAAATTTTATCAAACTGGGCAGAAGTATTTCAAGTTCAGTGTTAGACATACGTGGGGTGCCAAGGACGGATGAAGAACACATACACTTGTGTAGGTACCAAGATTACCATCCGTTGGTAGCCTTTTTACGAGATGCTGATACAGTTTCTGTGACAAAGAGAAGTCCTCCTTTTGATAAGGGGTTGGAGTTGAAAAAATGTGGGGTGCATCTAATCTTTGAAGGGGATGATGATTATGAAGGAAACGAAGAGTCGTTGGACAATGGCCTACTATCTGTCTCAGAAAAATTGGCCAAATTTTTCAACACCTGTGATGGTGATGATGTCATGATCCATGACACTAAGAGGGAAGATGAGTGCCAACATGAATTTGAGCAGGAAAAAGAAGAGCCTAGTTCATCTCATGTTACACTTAAAGACAAACCCATTCTTCTCTTCCTGATTAGTCTATTCTTTGTGCTATTGAGTTGGTTTTGCTTGAGAGATGTCTGTGTTGGGCCACGGACTAAAGACAGCAAGCAGGCTTCAAAGGTCAACACCCCACAATCAGCTACTGATTCAAACCTCATATATTTCTTCTCTGGGCTTGCTGTTGTTCACAATTGGGTTCTTCTTATGTTCATGAGGAAGCTTGAATATCTTGCCCATGATTGGCCCAGGCATGCTGATGGGGACACTGCATTAGCCATTTCTCGGGACTTCTTTCTCATGTACATGTGGAAATATGATCAGTTGCTTATT

Protein Sequence

>Glyur000830s00028260.1
MSSSPGSDVAPGGGFRLRWDVFLSFRGEDTRESFTKSLYESLQSVGVRAFMDDEGLERGDEIAPSLIEAIHDSAASIVILSPRYADSHWCLEELATICHCRRLLIPVFYRVDPSHVRKQAGPFEPGFRSHEVRFAQQREKISRWREAIDDGHENLIRRLVQRVLKELSNTPMVVGEFAVGLDGRVEKVTELLQVQSNGVRFLGLYGMGGVGKTTLAKALFNSLVRHFDRRCFVSDVRQVSSKEDGLVSLQNKIINDLVDPKEDARGLTTITDVNAGLSAIKRIVHENRVLLVLDDVDDVNQLDTLIGKREWFYEGSRIVITTRDTRVFMHKSHHVIVNENELYEVKELYPEEALELFKKCLIKITLENTLSMHDQIRDMGRQIVLDENHGTRCIQGIVLDFKEQTKQRNTNFLQPQAEKNNEVILYTKSFEPMVNLRLLEINNLRLEGQCLPAELKWLQWRGCPXECMPLDPWPRELAVLDLSNSHKMKKLWGWEGYKVPENLMVMNLSNCFQLAAIPDLSGCLRLEKINLENCINLTRIHESIGSLTTLRSLNLTLCSKLIGIPIDVSGLKHLESLILSRCSKLKALPENIGILESLKTLLVDNTAIVELPQSIFCLTKLERLVLDGCSYLRRLPNCIGHLCSLQELSLNQSGLEELPNSVGSLKNLEKFSLIRCESLTVIPDSIGNLISLTELWVGNSGIKELPSTIGSLSYLMELSVGNCKLLSKLPDSIKTLASLIELQLDGTSITNLPDQIGDMKQLRRLEIGNCSHLESLPESIGHLSSLTRLNIFNGNIRELPESIGLLENLVTLRLNKCRMLRKLPASIGXLKSLCHFHMEETAMSDLPKSFGMLSSLRTLRMAKRPHLVPTENAKAEETTFVLPSSFCNLILLYELDARAWRISGKIPDDFEKLSSLETLNLGQNNFHSLPSSLKGLSILKKLSLPNCRELISLPSLPSCLTELNVENCSALETIHDMSNLESLQELNLTNCEKVVDIPGLECFKSLRRLFLNGCIACSSQIPNRLSKVALRNLENLSMPGTRLPEWFSGQIVSFSKPKNLELTSVIIGVVFSINHNIDIPNISRNEMPGVIDLQANFIKLGRSISSSVLDIRGVPRTDEEHIHLCRYQDYHPLVAFLRDADTVSVTKRSPPFDKGLELKKCGVHLIFEGDDDYEGNEESLDNGLLSVSEKLAKFFNTCDGDDVMIHDTKREDECQHEFEQEKEEPSSSHVTLKDKPILLFLISLFFVLLSWFCLRDVCVGPRTKDSKQASKVNTPQSATDSNLIYFFSGLAVVHNWVLLMFMRKLEYLAHDWPRHADGDTALAISRDFFLMYMWKYDQLLI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00830	32653	39079	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000830s00028260.1	PF01582.15	TIR	21	148	1.50E-26
Glyur000830s00028260.1	PF00931.17	NB-ARC	183	384	5.40E-33
Glyur000830s00028260.1	PF00560.28	LRR_1	915	936	0.21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.800
SRR1783600	control	3.665
SRR1783602	moderate drought stress	6.423
SRR1811619	moderate drought stress	6.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.543
DRR006520	Root Summer glycyrrhizin high producing strain	5.397
DRR006521	Root Winter glycyrrhizin high producing strain	2.820
DRR006522	Root Winter glycyrrhizin high producing strain	2.872
DRR006523	Root Summer glycyrrhizin low producing strain	6.913
DRR006524	Root Summer glycyrrhizin low producing strain	6.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.545
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.433
SRR2868004	Drought Stress (root)	3.993
SRR2967015	Control (root)	4.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.467
SRR9715740	Leaf	2.577
SRR9715741	Leaf	4.285
SRR9715739	Root	1.344
SRR9715742	Root	4.948
SRR9715743	Root	4.114

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.114
SRR8749028	MeJA induced 9h	0.820
SRR8749029	MeJA induced 9h	0.568
SRR8749030	Uninduced	0.427
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	0.383

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.241
SRR8400027	Control - Root	8.866