Gene detail information of Glyur000830s00028258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19440.1 | 2.00E-49 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH19919.1 | 4.88E-77 | cinnamyl alcohol dehydrogenase [Medicago truncatula] |
| COG | YP_002017749.1 | 2.00E-11 | NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1] |
| Swissprot | tr|Q9S9N9|CCR1_ARATH | 2.00E-22 | Cinnamoyl-CoA reductase 1 |
| trEMBL | tr|A0A072TR03|A0A072TR03_MEDTR | 2.00E-77 | Cinnamyl alcohol dehydrogenase {ECO:0000313|EMBL:KEH19919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00830 | 11991 | 23582 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.466 |
| SRR1783600 | control | 9.756 |
| SRR1783602 | moderate drought stress | 10.200 |
| SRR1811619 | moderate drought stress | 10.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.980 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.020 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.119 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.598 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.929 |
| SRR2868004 | Drought Stress (root) | 20.900 |
| SRR2967015 | Control (root) | 18.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.328 |
| SRR9715740 | Leaf | 17.550 |
| SRR9715741 | Leaf | 29.187 |
| SRR9715739 | Root | 3.675 |
| SRR9715742 | Root | 11.410 |
| SRR9715743 | Root | 9.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.417 |
| SRR8749028 | MeJA induced 9h | 15.112 |
| SRR8749029 | MeJA induced 9h | 16.650 |
| SRR8749030 | Uninduced | 15.557 |
| SRR8749031 | Uninduced | 9.178 |
| SRR8749032 | Uninduced | 11.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.519 |
| SRR8400027 | Control - Root | 19.053 |