Gene detail information of Glyur000830s00028256 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66800.1 | 4.00E-41 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH19927.1 | 8.98E-61 | cinnamyl alcohol dehydrogenase [Medicago truncatula] |
| COG | YP_002017749.1 | 5.00E-25 | NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1] |
| Swissprot | tr|P51104|DFRA_DIACA | 3.00E-39 | Dihydroflavonol-4-reductase |
| trEMBL | tr|A0A072TRB7|A0A072TRB7_MEDTR | 3.00E-61 | Cinnamyl alcohol dehydrogenase {ECO:0000313|EMBL:KEH19927.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00830 | 8977 | 9459 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000830s00028256.1 | PF13460.1 | NAD_binding_10 | 22 | 104 | 3.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.289 |
| SRR1783600 | control | 8.899 |
| SRR1783602 | moderate drought stress | 11.085 |
| SRR1811619 | moderate drought stress | 9.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.597 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.571 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.470 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.898 |
| SRR2868004 | Drought Stress (root) | 16.763 |
| SRR2967015 | Control (root) | 16.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.965 |
| SRR9715740 | Leaf | 12.309 |
| SRR9715741 | Leaf | 21.270 |
| SRR9715739 | Root | 5.439 |
| SRR9715742 | Root | 14.518 |
| SRR9715743 | Root | 10.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.229 |
| SRR8749028 | MeJA induced 9h | 8.181 |
| SRR8749029 | MeJA induced 9h | 3.723 |
| SRR8749030 | Uninduced | 3.160 |
| SRR8749031 | Uninduced | 1.535 |
| SRR8749032 | Uninduced | 1.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.663 |
| SRR8400027 | Control - Root | 22.724 |