Gene detail

Gene detail information of Glyur000829s00031122.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39280.1	2.00E-175	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NR	KHN25375.1	0	Putative phenylalanine--tRNA ligase alpha subunit [Glycine soja]
COG	YP_687290.1	2.00E-67	phenylalanyl-tRNA synthetase subunit alpha [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q9T034\|SYFA_ARATH	0	Probable phenylalanine--tRNA ligase alpha subunit
trEMBL	tr\|G7JG63\|G7JG63_MEDTR	0	Phenylalanyl-tRNA synthetase alpha chain, putative {ECO:0000313\|EMBL:AES89103.1}

Sequence

Transcript Sequence

>Glyur000829s00031122.1
CTGAAGAATTCAAATGGTAAATATAACTTGTGGATGTTGTTTATATGGTGCACACAGGATATTAAGAGGGAGACGTGGGTGCTCACTGATGAAGGGAAGACTTATGCTGCTATTGGATCCCCTGAAGNACAACTCTTGTTGGCTATTCCACCAGAGGGNATCTCCAGAGATGAACTTCAGAAAAAGCTGGGTCCTTCAGTCTTTAAGATAGGTTGTGCCCAGGCTGCNAAGAACAAATGGGTNGAGATGGGGAAACNACTAATCTCTAGGAAGGTCGAACACGTGGAGGACAGAGTCAAANACCTGCTTCTTCAAGTACAACAACAGGGACAGGGCATTGGTTCAGATGATATCAAAGCACTCAAAGCAAGAAAGCTTATTATTCCACAGACATGGAAGGGTTACTCAGTGAAAAAGGGTCCTAACTATGCTCCAAANAGAAAGCAGGTTGTAACTGATTTAACTCGAGATAATTTTCAGAGTGGTGAGTGGAAGGGATTAGAGTTCAAAGAGTACAATTACAGTGCTAANGGTCNGCCTCTTGAGGGTGGCCATCTTCATCCATTGNTGAAGGCAAGGAGATATTTTCCCTGTCAAGTATCAACTGAAACAGATTTTCCTCTGTATGGGGCCTTTGATTTGAATGATGACAAGGTGAAAATGGAGCGATTTTTATTTTACATGGGAGAGAACACCTCTTATGTTCTTGGAAAGCATGATCCTTTGATTCTTGCTTATATGTGTTATTTTGATGCTAGATTTTATCTTTGGAACTTTTGGAACTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCTCGTGATTCTCATGACACATTTTTTTTGGAAGCTCCTTCAACAACAAAGAAACTGCCTGAAGATTATGTTCAGCGGGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCGAGGGGATATGCATATGACTGGAAAAGNGAGGAAGCAAATAAAAACCTCCTGCGGACCCACACAACTGCTGTTTCCTCCAGGATGCTTTACCAGCTGGCACAGAAACCATTTGCTCCAAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGAACACATCTTGCNGAGTTCCACCAGATAGAAGGCCTTGTATGCGATCGAGGACTCACTCTCTGTGACTTAATAGGAGTTCTAAATGATTTCTTCTCACGCTTAGGCATGACCAAGCTGAAGTTCAAACCTGCTTACAACCCATACACAGAACCTAGCATGGAGATTTTCAGGTNAGTCTTTCTTTATGATTGTTTGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGCCAACGATGATACTTTATGGGATAGATAACATCAGGGATCTCTTTGGACCCAAGGTGGATCTTGGCCTTATAAAGAAAAATTCAATATGTCGTCTTGGAATTGACTAAAATGATCCATTCATAGCATGTCTTGTCTAGTGTATTTCTTGTCATCCATATTTGTTTTTTCTTCTCTAAGTTCGAATAGTACATGTGGATTAGTTCAATTTCTTTATGAAGAATTTTGATATGGAAGAAAAAAGTATGGTCTTATTAAAGGTACCTTGTGGTAATATCATCTTTCTTTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00829	52505	58374	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01889	FARSA, pheS	EC:6.1.1.20	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000829s00031122.1	PF01409.15	tRNA-synt_2d	258	424	1.20E-51
Glyur000829s00031122.1	PF01409.15	tRNA-synt_2d	432	470	6.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.657
SRR1783600	control	33.404
SRR1783602	moderate drought stress	34.810
SRR1811619	moderate drought stress	34.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.076
DRR006520	Root Summer glycyrrhizin high producing strain	38.995
DRR006521	Root Winter glycyrrhizin high producing strain	50.115
DRR006522	Root Winter glycyrrhizin high producing strain	48.669
DRR006523	Root Summer glycyrrhizin low producing strain	35.571
DRR006524	Root Summer glycyrrhizin low producing strain	34.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	81.601
SRR2868004	Drought Stress (root)	76.891
SRR2967015	Control (root)	83.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.556
SRR9715740	Leaf	43.797
SRR9715741	Leaf	58.228
SRR9715739	Root	23.774
SRR9715742	Root	51.264
SRR9715743	Root	47.905

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.611
SRR8749028	MeJA induced 9h	71.215
SRR8749029	MeJA induced 9h	71.075
SRR8749030	Uninduced	74.878
SRR8749031	Uninduced	60.413
SRR8749032	Uninduced	77.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	75.739
SRR8400027	Control - Root	67.201