Gene detail

Gene detail information of Glyur000828s00035265.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G34940.2	4.00E-171	glucuronidase 3
NR	XP_004488517.1	0	PREDICTED: heparanase-like protein 3-like [Cicer arietinum]
Swissprot	tr\|Q9FZP1\|HPSE3_ARATH	0	Heparanase-like protein 3 (Precursor)
trEMBL	tr\|I1MHW9\|I1MHW9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G23550.1}

Sequence

Transcript Sequence

>Glyur000828s00035265.1
CTTTAATACAATGTTGCTTTGAGGAGTCCGGGGAAAAGCCCTTCTTATATATTCATGTATATAAGAGCCACATCGTTGGGCTTGCCATGTACAATAACATTACAACAACAACAAACGAAGTGTCTTAATTGAGTTAATTCTCTTTCCATCACGGTATTTATTTTGTAAAGACAAGCCTTTGCCGCAAAGAAAAAAAAATATTGTGACATTTAAAGTCACCTTTCTCCTTTTCCTTTAGGCATGACATGTGACTCTCTCTCTCTCTCTCTCTCCCAACTCACTCTCCATTTCCATTGCTTGCTCAAATGTCAAATGATGCATGAATAGAGAGAGAGATATCACAAAGATCTTGAATTTGGCTGATTCTGGAAATGGGTTATCGGATTCAGCTTCTGGGGTGGTTGTATTTGTCATGCTTCAGCTTCGTTATTGTTAGCAGCACACTGAGTACTGAAAGAGGAGATGCTGCTGCGAAAGGGACTGTCATCATTGATGGGAAATCTGTGATTGGAAATATTGATGATGATTTTGTTTGCGCAACTCTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGGAGATGCAGTTGGGGTCTTGCTTCTCTTCTCAATCTGGACCTCAACAACAAGATTTTGTTAAATGCAGTGAAAGCGTTTTCACCTTTGAAACTTAGATTAGGTGGAAGTTTGCAAGATAAATTAATATATGAGACTGAAGATTGCCACCAACCATGTACTCCTTTTTTTAAGAACGATTCTGAAATGTTTGGTTTCACACGAGGGTGCCTCCCAATGCATAGATGGGATGAACTCAACAACTTTTTCCAAAAAGCAGGGGCTAAGATTGTCTTTGGATTGAATGCTCTTGCTGGAAAATCAATACACTCCGGTTCTGCAAAAGGACCTTGGAACTACACCAATGCTGAATCGTTTATTCAATATACTGTTGGAAAGAACTACATCATTCATGGATGGGAACTTGGCAATGAATTGAGTGGGAATGGAGTTGGAACAAGTATTTCTGCAGACCAATATGCATCTGATGTTGCTGCTTTACAAGACATAGTTCACAATGCATACAGAGATGTTGAGCCTAAGCCGCTAGTCATTGCACCTGGAGGTTTCTTTGATGCAACTTGGTTCAAGGAATTTATAAGCAAATCTGGGAAATCTTTGGATGTGGTCACCCATCACATCTATAACCTTGGACCAGGAGTTGATGAGCACCTTGTGGAAAAAATTCTTGATCCTTCGTATCTCGATAGAGAGGCAAGCACATTCAAAGGCCTGAAAAATATACTAGAAAGTACAGCAACCNCAGCAACAGCATGGGTTAGTGAGTCAGGAGGGGCTTACAACAGTGGCCATCATCTTGTATCTGATGCATTTGTGTACAGTTTCTGGTATTTGGATCAGCTTGGCATGTCTGCTGCTTACGACACCAAGACATATTGCAGACAGAGTTTGATAGGAGGAAACTATGTGCTCTTCTTTGGCACCGACTCATGGGAAAGCGTGTACTGTCAACTACCTTCTCAGGGACAACCAAGATACGAGCTTATGCACACTAAAGGGATCACAGTACTATTGATCAACCTGGACAACAGCACTGCTGTTGAAACCCAAGTGACCTTCAGCAACACTAAGAGCTTGTGGCACAGAAAGATGGCTATGAAACTACCTCTTCACAATAATGCAGCAAGTGAAACAGCAGCAAGAGAAGAGTACCATCTAACTCCACAGGATGGGAATATACATAGCCAAATCATGGTACTAAATGGAAACGCTCTAACTGTAACAGCTGGTGGTGATATTCCTCCTTTGGAGCCTCTATTTGTTAACTCATCAAAGCCAATAAGGGTTGCTCCTTTCTCTATTGTATTTATCCACATACCTGATGCTTTTGTTCCAGCTTGCAGCTAGGCGGGGTCACTTGGTGATTGAGCAACTTAAATGGAAAATAATACTGATTTTCAATTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00828	98719	102806	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH79

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07964	HPSE	EC:3.2.1.166	Glycosaminoglycan degradation	map00531
			Proteoglycans in cancer	map05205

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000828s00035265.1	PF03662.9	Glyco_hydro_79n	34	350	1.20E-157

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.039
SRR1783600	control	7.080
SRR1783602	moderate drought stress	2.833
SRR1811619	moderate drought stress	2.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.263
DRR006520	Root Summer glycyrrhizin high producing strain	22.183
DRR006521	Root Winter glycyrrhizin high producing strain	0.315
DRR006522	Root Winter glycyrrhizin high producing strain	0.307
DRR006523	Root Summer glycyrrhizin low producing strain	13.689
DRR006524	Root Summer glycyrrhizin low producing strain	13.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.473
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.662

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.734
SRR2868004	Drought Stress (root)	15.566
SRR2967015	Control (root)	12.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.114
SRR9715740	Leaf	11.748
SRR9715741	Leaf	5.321
SRR9715739	Root	5.879
SRR9715742	Root	9.545
SRR9715743	Root	8.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.324
SRR8749028	MeJA induced 9h	2.944
SRR8749029	MeJA induced 9h	3.554
SRR8749030	Uninduced	0.536
SRR8749031	Uninduced	0.270
SRR8749032	Uninduced	0.926

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.854
SRR8400027	Control - Root	27.697