Gene detail

Gene detail information of Glyur000828s00035259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25290.3	1.00E-150	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
NR	XP_004488516.1	0	PREDICTED: uncharacterized protein LOC101492369 [Cicer arietinum]
COG	YP_722042.1	9.00E-06	hypothetical protein Tery_2349 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q84JR9\|TTL4_ARATH	2.00E-10	TPR repeat-containing thioredoxin TTL4
trEMBL	tr\|I1L282\|I1L282_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G12000.1}

Sequence

Transcript Sequence

>Glyur000828s00035259.1
CATTATCTGATTCTTTTTTCTCCTCCTCTTTCCTTTTGTGGGTGGCGTTTACGTCAAGGATGTGAAAATCTTATTACTTTCAAAAAAGGGGGCGACGGAATAACATGGCTTGGCTTCCTTCCATTTCTCGCATTTCAGATTTCCCTGCCAAAGTTTGAAGCTTTTTCCAATAATTTCTCACCTCAGATAAGTTTTTTATTTCTCGCATTCTCATCAAATTGTGGGTCTTTTTTTGTTTTTCACCAATCCCTCTATCTGATAAAACCAAAGGGGAATTTCCTTCTCCTTCAAATCTGAGTTGGGCTGTCCTTGTTGTCCCCTCTCTGAGTTGGGATTTGTATCAGCAGAAACAAATCCTGATTTGGAGAGATGGGTGTGTTTGTGTTGAAAAAGTGCTTCTAGATTCCTTGAATCCTTAGCCATTATGATTAGAGTTAGAGTTGATTGATTCTTCAGTAGTAATATACAACTTTGAGACTTTTGAGCTTGTTTTCCTGATAGCTGCCACTCTTCTATTATATCATCTAGCTTATGTTGTTGTTCTTCCACCATTTCATGGGCTTTTGTGTACTCTGCAATGTTCATAAGCTTATCTGAAGCTCTTTCCTTCTAATTTATCGTTGTGTTTGGCTTTTGGATTTGTTATCTTGTATATGCAATTGACTTATTTGAAAAAAACAAAAATAAAAAATAAAGAGGCATCTCTTCCTTTCTTATGTGGTTGAGTGGATTGAACTGTGAGTGTTGTGGACTAGGAGGAGTGGTATCTTGGATTAGTTGTTTCTTTACTGTTTGATTGTTGGGTTCCAAATGGGGGAAAAAAAGAAGCAAGTGGGAGAAACAAGTGAAGACAGTGGAAATCATAGCAAGGTCGGAGGAGATAGAAGCCCCAAAGGTTATGATGATGATACTATGGTATTTATATCCATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGTTGTTCCAAAAGCATGATCTTGAAGGAGCTTTGGCAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGGAATCATATAGACGTGTCGTATCTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGATTCGGTGAGTACCCTAGGGCGATTCATGAATGCAATTTGGCTCTTGAAGTAACACCGAAATACAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTAGATTTAGCACTGAGAGATGTTAGTACTGTTTTGAAGATGGAACCGAATAATATCATGGCGTTGGAGATCTCTGATAAAGTGAAAAATGCACTTGAAGTTAAAGGATTAAGAGTAAACGGTACGGAAATCGAGTTGCCTCCAGATTATGTCGAACCTCCTTACGCTTTGCCTCCCGAAAAGGTAGTGAAAGAAAAGACAAACAAGAAGAAGAAGAGCAACAAAGAGAAGGTGAAGGCTCCCAATGAAATTGTAGAAAAGCAAGCTGAGGATAAATTAGAAGAGAAGAAAGCTGAGGACAGTGTTGTAGCAAAGAAAGCTGAGGACAGTCTGAAAGTAAAGAAGGCTAAAACATCTAAAAAGAAGAAGGCCAAGGAAAAAATTGATAAGAAGGACGACGTTAAGGAGGTCAATGAAGGAAAAATTAATGGTAGAAGTGAAGAAATACCGAGAAAAACAGCAAAACTTGTATTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGATCGGTTCCCAAGCGTAGGAGCAGTTCTTGTCAAATATAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATAGTAGAAGCTAATCCTAATCAGGATCCTTTCTATGAGAAATTCCATGTGAAGGATGTGGAAAAGGTTGGCATTGATAATGCTCCAAAGAATGGCTGCGTGGTGAAAGGAAAGGAAATTATTACCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCACAACTGTTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAGGAGACAGTTACAAGTGATGAAGCACAAGGCCTATTTGACATGGCAGGAAGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCAAGGGCAAGGAAGAAAGTGTGTTTAACAGAAGATTCTTCTAAAGAGCATGTGTACGAACAAATCAAAAGTTCGTATGAATGGGCGCAGAAGGAATATGCAAAAGCCGGAGAAAAATATGAAGCAGCCATTAGTATTAAATCAGATTTTTATGAAGGCTTCCTGGCTCTAGGCCAGCAGCAGTTTGAGAAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATATAGATTTAGCAACATGGCCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAATATGGAGAAAGGAATGCTGATGTGGGAAGAATCAGCAGAGAAGCAGTTGAGTGAAACTTCCAACACAAAGGATATTAGCTTACATATGCAGAACATGGGGTTGGATGAGTTATTTAAAAATATGTCATCAGATGAAACTGCTTCGCAGGCGGCAAACATGAGGTCTCAAATAAATCTCCTGTGGGGTACCATGCTTTATGAACGCTCGATTGTGGAATTCAAATTAGGGCTACCTGTATGGCATGAATCTCTAGAAGTAGCAGTCGAGAAGTTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAAAACCACTGTTCAAATCACACTGCTGTAGATGGTCTAGGATTCAAAATTGATGAAATAGTACAGGCGTGGAATGAGATGTANGAAGCTAAGAAGTTGCAGAAAGGAGTTCCATCGTTTCGTTTGGAACCTTTGTTTAGAAGAAGAGTATCGAAAATTTACCATGCCTTTGAGCTTGTATGAGTTGCATCTTTTTCTGCAAGGCGTTGTACAATAACAAAGCCAACACACACATAGGTTGCTTTTGTGCCTGAAATGCTGTTGTCCTCACAAGNTCTCTTTTGCTACTTTTCAAAGAGTTTGGATACATTTGTAGTTATAGAGAGAAACTATTCTTTTCTTTACAGGTTGGGAAGATTAGAGTTGCAGGAATTGCTTTTAACACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00828	14433	19973	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000828s00035259.1	PF13414.1	TPR_11	40	112	1.10E-16
Glyur000828s00035259.1	PF00515.23	TPR_1	116	148	0.0087
Glyur000828s00035259.1	PF00564.19	PB1	283	356	1.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.260
SRR1783600	control	2.300
SRR1783602	moderate drought stress	2.661
SRR1811619	moderate drought stress	2.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.806
DRR006520	Root Summer glycyrrhizin high producing strain	4.678
DRR006521	Root Winter glycyrrhizin high producing strain	3.972
DRR006522	Root Winter glycyrrhizin high producing strain	3.839
DRR006523	Root Summer glycyrrhizin low producing strain	5.590
DRR006524	Root Summer glycyrrhizin low producing strain	5.471
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.192
SRR2868004	Drought Stress (root)	9.833
SRR2967015	Control (root)	11.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.037
SRR9715740	Leaf	13.772
SRR9715741	Leaf	11.703
SRR9715739	Root	0.505
SRR9715742	Root	3.656
SRR9715743	Root	2.490

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.799
SRR8749028	MeJA induced 9h	6.875
SRR8749029	MeJA induced 9h	2.611
SRR8749030	Uninduced	10.672
SRR8749031	Uninduced	23.746
SRR8749032	Uninduced	7.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.470
SRR8400027	Control - Root	5.370