Gene detail

Gene detail information of Glyur000827s00023987

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G24020.1	NIN like protein 7
NR	XP_003533182.2	PREDICTED: protein NLP7-like [Glycine max]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	Protein NLP7
trEMBL	tr\|K7LDR9\|K7LDR9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G25230.2}

Sequence

Transcript Sequence

>Glyur000827s00023987.1
ATGTCAGAATCAGAAGATGAAAACCAAGACTTTCATCCCAAGTCCAAGCCACTGGAGGAACATGGGTTTGCCATGGATTTTGATATTGACCTTGAAAGTTCATCATGGCCTTTGGATCATTTATCAAACCCCATGTCTCCTTTTCTCTTATCCACCNTCTCTGAACAACCTTTTTCTCCTATCTGGGCCTTTTCTGATGTGGAAGATGAAAGGCATGTCAGCATTGCAGCTTCAGGTAATACATTAACTGAAACCCCAGTTGAAAATGATGGCAGCAAAAAACTTGTGTCACCACTTGTAGCTCTTCCACATATAGAAAACCCAGTTGGCTTTTGTCTAATCAAGGAAAGAATGACACAAGCGCTTCGCTACTTCAAAGAGTGGACTCAACAGAATGTTCTGGCTCAGGTTTGGGCACCGGTGAGGAANGGGAACCGGTACAAGCTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTANAGAACAGTCTCCTTGATGTATATGTTCTCTTTGGATGGAGAGAATGATGAGATTCTTGGGCTTCCTGGAAGAGTCTTTCAGCAGAAGTTACCGGAATGGACTCCGAATGTTCAGTACTATTCTAGTAAAGAGTATTCACGCCTAAACCACGCTCAGCATTACAATGTTTGCGGAACCTTGGCACTGCCTGTGTTTGAACCTCCAGGGCAGTCATGTGTTGCTGTNCTGGAGTTGATACTGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATANAGTCTGCAAGGCCCTTGAGATTTGTAATGAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTTGTGTGTGAAACTCACAACTTACCATTGGCACAAACATGGGTACCCTGTAGGCATAGGAGTGTTTTGGCACATGGTGGTGGTCTTAAGAAAAGTTGCTCAAGTTTTGATGGTTATTGCATGGGGCAAGTTTGCATGTCCATAACTGAGGTAGCATTCTATGTCATAGATGCTCACACATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGGAGGGCATTNTTGTCACACAACATGTGCTTCTGTGGAAACATTACACAGTTCTGCAAAACNGATTACCCTTTAGTACACTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTACAAAGCTCTCACACTGGAGATGATGATTATGTGTTAGAGTTCTTTCTGCCTCCAATGATCACAGACTTTTGTGAACAAAAGGCTTTGTTGGGATCCATATTGGAAACAATGAAACAANATTTTCGGAGTCTTAAGCTTGCTTCTGGTGTTGAACTTGAGGAGGATGGTTCAATTGAAATTGTGGAAATAGTAAATGGAAGAGCTCATTTGAGNCTTGAATCTGTTCCAATTAGCCAATATGCTAAATCACCAACTACACATGATGATGCCTTGCCAAAAATGGGGGAGGGGGTGCCACTAGATCCATCACAACAGCGAATGATGTTGATGAATTCTGATNACATGAATGATGGAGGGTGTCTTGGTGATAATGCAGGTGGGAGTATTGATCACATCTCTTCCTTGGAGACCAAAGCCAACAAGGAACCCTCGGAGAGGAAACGTGGAAAAGCTGAGAAGTCAATTAGTCTNGAAGTTTTGCAACATTATTTCAGTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGACAGCACGGAATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCTTNTCCAAGCTCAAGTGTGTGATGGAATCAGTCCATGGTGTTGAAGGAGTATTTGGTCTGAATTCTCCAAGCACAAGTCCACATCCTATTGCTGCTGCTGGTTCCTTTACTGAGCCTTGTACTATTTCAAACAAGTTTGAACACCAAGCCTCATTAAGCATTATTAGGCCATCATCAGAAGAACATAAGATGAATGAAAATGATTTTGATGCTTCTAAAGAATCAGAAACAAAGATGGAAGATCAANTGCTAGGAGNANCAAGGACACAAAGTCCTGAGAAAGTGACAAATGACAAAGTTGTAGATCCTACTACTCCTCATGGTTCATGCAATGAACCTCAAGATTCATTTGGANGGATGCTAATTGAAGGTGCTGATAGTTCCAAAGACTTGAGAAATCTGTGTCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTCCAAGAACCTTGTGGGACTAATCCTCCTATGCTGCAATGCNTGGATGCTTTCAATAGCACTATGACACCCTTTAGAACTCAAAAAGAGATNAAGGGTGTGACTATTAAGGCAACATATAGAGATGACATCATAAGGTTTAGGATCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAATTGGCAAAAGGTTGAGACTAGAGGTTGGTACATTTGATATCAAGTATCTGGATGATGATCATGAGTGGATTTTGGTGGCATGTGATGCAGATCTTCAGGAGTGNATGGATATTTTAGGATCATCAGGAAGCAACATTATCAGGCTTGTGGTGCATGATATAGTGTCCATTCTTGGAAGCTCTGTTGAGAGCTCAGAGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00827	72442	77961	+

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000827s00023987.1	PF02042.10	RWP-RK	557	608	2.50E-27
Glyur000827s00023987.1	PF00564.19	PB1	790	870	4.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.509
SRR1783600	control	1.452
SRR1783602	moderate drought stress	1.019
SRR1811619	moderate drought stress	0.994

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.562
DRR006520	Root Summer glycyrrhizin high producing strain	1.261
DRR006521	Root Winter glycyrrhizin high producing strain	0.188
DRR006522	Root Winter glycyrrhizin high producing strain	0.275
DRR006523	Root Summer glycyrrhizin low producing strain	1.484
DRR006524	Root Summer glycyrrhizin low producing strain	1.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.211

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.884
SRR2868004	Drought Stress (root)	9.755
SRR2967015	Control (root)	7.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.930
SRR9715740	Leaf	1.513
SRR9715741	Leaf	1.647
SRR9715739	Root	0.525
SRR9715742	Root	2.785
SRR9715743	Root	2.046

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.065
SRR8749028	MeJA induced 9h	0.025
SRR8749029	MeJA induced 9h	0.048
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.091
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.091
SRR8400027	Control - Root	5.221