Gene detail information of Glyur000826s00029640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05200.1 | 0 | Protein kinase superfamily protein |
| NR | XP_003615440.1 | 0 | aarF domain-containing protein kinase, putative [Medicago truncatula] |
| COG | YP_005887396.1 | 1.00E-144 | ABC1 family protein kinase-like protein [Marinobacter adhaerens HP15] |
| Swissprot | tr|Q9ASX5|Y5520_ARATH | 0 | Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic (Precursor) |
| trEMBL | tr|G7KD96|G7KD96_MEDTR | 0 | ABC1 family kinase {ECO:0000313|EMBL:AES98398.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00826 | 52484 | 59520 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000826s00029640.1 | PF03109.11 | ABC1 | 189 | 312 | 6.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.176 |
| SRR1783600 | control | 9.132 |
| SRR1783602 | moderate drought stress | 11.222 |
| SRR1811619 | moderate drought stress | 11.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.484 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.873 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 72.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 71.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.019 |
| SRR2868004 | Drought Stress (root) | 21.668 |
| SRR2967015 | Control (root) | 21.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.973 |
| SRR9715740 | Leaf | 110.418 |
| SRR9715741 | Leaf | 61.314 |
| SRR9715739 | Root | 9.136 |
| SRR9715742 | Root | 10.377 |
| SRR9715743 | Root | 10.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.867 |
| SRR8749028 | MeJA induced 9h | 13.630 |
| SRR8749029 | MeJA induced 9h | 13.897 |
| SRR8749030 | Uninduced | 20.142 |
| SRR8749031 | Uninduced | 16.262 |
| SRR8749032 | Uninduced | 12.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.701 |
| SRR8400027 | Control - Root | 18.863 |