Gene detail information of Glyur000825s00032931 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34380.2 | 6.00E-119 | 5'-3' exonuclease family protein |
| NR | XP_003548949.1 | 0 | PREDICTED: uncharacterized protein LOC100797174 [Glycine max] |
| COG | YP_002508239.1 | 2.00E-25 | DNA polymerase I [Halothermothrix orenii H 168] |
| trEMBL | tr|K7MHK5|K7MHK5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G27271.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00825 | 76797 | 85544 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000825s00032931.1 | PF02739.11 | 5_3_exonuc_N | 88 | 232 | 5.70E-20 |
| Glyur000825s00032931.1 | PF01367.15 | 5_3_exonuc | 242 | 327 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.143 |
| SRR1783600 | control | 2.102 |
| SRR1783602 | moderate drought stress | 3.475 |
| SRR1811619 | moderate drought stress | 3.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.780 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.486 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.238 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.254 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.807 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.606 |
| SRR2868004 | Drought Stress (root) | 2.031 |
| SRR2967015 | Control (root) | 2.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.717 |
| SRR9715740 | Leaf | 3.341 |
| SRR9715741 | Leaf | 2.579 |
| SRR9715739 | Root | 0.439 |
| SRR9715742 | Root | 1.244 |
| SRR9715743 | Root | 0.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.279 |
| SRR8749028 | MeJA induced 9h | 1.456 |
| SRR8749029 | MeJA induced 9h | 1.053 |
| SRR8749030 | Uninduced | 0.489 |
| SRR8749031 | Uninduced | 0.248 |
| SRR8749032 | Uninduced | 0.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.276 |
| SRR8400027 | Control - Root | 2.938 |