Gene detail

Gene detail information of Glyur000825s00032927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34355.1	8.00E-83	forkhead-associated (FHA) domain-containing protein
NR	XP_003548950.1	0	PREDICTED: uncharacterized protein LOC100797723 [Glycine max]
trEMBL	tr\|I1MNY4\|I1MNY4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G27290.2}

Sequence

Transcript Sequence

>Glyur000825s00032927.1
ATGGCTTCCAAGGCAGAGAGTAACAACCCATCATCAGAAGAGGAGGGGAAAATCCCAGTGCTCACAGTGCTGAAGAACAACGCAGTCCTCAAGAACATCTTCATCGTTAACAAGCCCCAAGAAGAAGAANAACAACAACACCACCATCATCGCCGCCGCGACGACCACGAAGACATCCTCCTCGTAGGTCGACACCCAGATTGCGACCTCATGCTCACTCACCCCAGCATCAGCCTGCATGGGACATGGGTGTCAGGGAGGAAGATAGAAGCGGGAGTGAGCGTGGAGATGAAGGAAGGTGACACGCTCAGGATTGGGGTTTCCAGCAGGGTTTATCGTCTTCATTGGATTCCCATTAGCCAAGCTTACGATTTGGAAAATCCCTTTGTGCCCCAGCAAGAAAGGGAAGAAGAAGAGCAGGAGATAGCACAGAAGCTGAATAGTTGTCCCGTTGAAACGGAAGAAGAAACTCAATCAGTGGATTCAGTTCTTGAGTGTATCAGATCCTTTTTCCTTGATGAGAATGTGGAACTAACTGCGGAAGAGAAGATTCCGGCAGCAGCACCTTTGATGCTGGATAACATTGTTTCTTTATGTTGTGAGGAAAAAGGGAAAAGCCCATCAAAAGATGAAACATTTGGTGGAGTCCCAAGTGACCCTTTTGGAACTGAAACATCCTATTCGGTTTCAACCTCTGATGGTGAAAAGGAGATGTGTGACTCTCTGAACCGGGTCCTATCGCCACCTTGTGTGGAATCAGTTGCTGAATGTGAGAATACATTGACAGAAAATTTGTCTGAGACTGATTGTTTGCCATTTGTGGAAGCTGTTTTGGGAACCAAAATGCAACAATTACAGTCTCCACATGATACATTTACTCCACCATTGCCACCTTCTATACAGAATTCATTTGAAAAGCAGTGTTCAATCTTGCTTATGGATATTGGTCCTGCATCTTTTGATGAAAAAATTACAGCTGAGGCTGTAACATCTAAGGAATCTGAATCTGGATGTACAGTCAGAGATAATGGAAGAAGGGTTACAGATGTTTCAACTGCTGGAGCTGGAATTTTCAATTCTGAGGACAAGTTTTTTCCATGTGAGGAAGTTATTCCTGGTACCAGATTTCAACAAATCAAAGTTATTGAAGAGGTTGCTATGGATTCATTATCTGATGGAAAGAAACAAAATACATGTGACCAAAGGCACTACTCACTCAATGAAATTGTTGAAGATGGTGGGAACAAGTCCACAGCTAGGAATTGTCCCATACCACTTCAGATAGAGTCAGTGAGTTCCTCAATGCCTCAGGAAGATGTTTTGAATATTAAAGAAGAGAACCAGGCTCTAAAACTTGATAGGGAAATCCTTGAAAGCAGAGAAGAAGAAGCAGTGGAGAAAAATTCAACAATTCGTAACATTTGGTCAAGAAGAGGTAAAGATGCTAGTGCTCCTCAGATTCGAACAAGCAAGACTGTACTTAAGAGCAAAGCTAATGTTGACAATGATGTTGCAATGAGCAATGAGAATGATATCATAAATAATGTAATCTCAAAGGATCTTCTCTCTGACCTTGATGGGGAAGAAGAAGAAATCTTTACTCCAGATAAAGAGAACTTCAGCCCAAATACCCTTCGATTGCAGTTTCTAAAAGAGAAGGGTAAGCCAGAAGAAATTAAACATTCCATGTCACAAAGGTCACACAATTCAAAGAGCACGAATGATATCACAAATAAAACCATCTCAAAGGATCTTTTCTCTGTTTTGGATGGGGAAGAAGAAGATGAAGACAACGAAATATACACTCCAGATAAGGAAAACTTCAGCCCAAATACCCTTCAATCACGGCTCCTAAAAAAGAAGGGTAAGCTAGAAGAAATTAAACGTTCCAAGTTGCAATGGTCACGAAATTTTGGTCCCAACATATATCTAGATGAAAGCATGAGCCCCACCTCAAACAAAGAGAATCAGATTCCAAAAGGATCCCAAGATCCCAAGATCAGAAGTTGCAGTAGTAATATCAAGCTGGTGCAGGAGCAAGATGTTATGGCACAGAAGAACAAAGTGGAAAGGGTACCCTTCCAATCATTAAAGAGCACAGGAGGCAAGGGAGGAAGATCAAGCACTTCTTGTCCTATTTCTGCTGCAGAAAGCATCGATGTCAGTAGTAAATGCAGACAAATTTTAGACATGCACATCAACCCTTCTGATATAAGCTGTGTGCAAAAGAGGAGTTGGGACATGATTGTGGATACTTCTTCTCTTACAGACAAGGAATCAAGGAAAGCTCTGCAGCTTTTACAAGGTCTCAAGGGGACTCGATTAGTCATTCCAAGATTAGTCATAAGGGAACTTCAAAGGATGAAGCAACAACTCACTATTTTCAGAAGAATTTCAGAGGCTTCTTTGGCATTGGAATGGATTGAAGAGTGTATGGTGAAGACAAACTGGTGGATTCATATCCAGAGCTCAGTGGAGGAAGAAGGGTCAATTGCTCCAACCCCACCTACTTCTCCTCAGACTCAATTTGGTGAAGAGAGTTTGACTTTTCTTTCATCCCACAAGTGTTCCATGGAAATTGCTTCACCAACAGTAGAAGATCACATCCTTGACTTTGCTCTTCTATATAAAAGAAGACAGCAATATGATGGACAACTTGTCCTTCTTAGTGAGGATGTCACTTTGAAAATCAAATGCATGGCAGAGGGGTTGTTATGTGAGCCAGTGCAGGAATTTCGTGAGAGTCTAGTGAATCCATTCTCTGGGAGGTTCTTGTGGACCAACAGCTCTCCCAGGGGACAGACTTGGTCTTGCCAGGACGACGTAGTTTTGAGGGAGAAATATTGTCCTTTGCCTTTGAAGAAGTCATCAAAGGGAGTTGCAAGCGGTTTGAAGCTCATTCTGCTTCACAATTCTCAATACAGGCACTGACTGAGCCACTGATAGTTCAGTTGAGCCTGCTGAACAATTTTGTTTAAGCCTCTATTCTCATTTGCTGGTGGCAATGTTGTTCAAAAGTTTCTCTAGCTGATATTACCCATAAAATGCATTCCATCAAGCTTGGTAGCAACATTTTAAAACCAAATAGGCTTAAATCTGTTTTTGGTCCCTCATTTTTTAGCGATTTTCGTTTTTAGTCCCTCAAAAATATATTTTAAATTTGAAAAGTATTTTCTAAATTTATATTTTGACCCCTCTCAATGCTTGATTCTTACCACCGTTCCCATTCCCATCGACATCTCCGACCACCGCGGCCCCCCGTCCCCGCTAGGAGTAGTTCCAGCGTCCTCCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00825	47820	53078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000825s00032927.1	PF13638.1	PIN_4	749	907	1.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.842
SRR1783600	control	1.767
SRR1783602	moderate drought stress	1.240
SRR1811619	moderate drought stress	1.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.384
DRR006520	Root Summer glycyrrhizin high producing strain	2.321
DRR006521	Root Winter glycyrrhizin high producing strain	0.962
DRR006522	Root Winter glycyrrhizin high producing strain	0.887
DRR006523	Root Summer glycyrrhizin low producing strain	0.758
DRR006524	Root Summer glycyrrhizin low producing strain	0.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.698
SRR2868004	Drought Stress (root)	2.019
SRR2967015	Control (root)	2.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.885
SRR9715740	Leaf	0.455
SRR9715741	Leaf	0.462
SRR9715739	Root	0.195
SRR9715742	Root	0.760
SRR9715743	Root	0.780

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.080
SRR8749028	MeJA induced 9h	1.905
SRR8749029	MeJA induced 9h	0.972
SRR8749030	Uninduced	0.077
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.372
SRR8400027	Control - Root	2.736