Gene detail information of Glyur000824s00026005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02080.1 | 2.00E-72 | Ribosomal protein S19e family protein |
| NR | NP_001237514.1 | 3.29E-99 | uncharacterized protein LOC100305587 [Glycine max] |
| COG | YP_007175351.1 | 1.00E-32 | ribosomal protein S19E (S16A) [Caldisphaera lagunensis DSM 15908] |
| Swissprot | tr|Q9SGA6|RS191_ARATH | 4.00E-92 | 40S ribosomal protein S19-1 |
| trEMBL | tr|C6SVR8|C6SVR8_SOYBN | 1.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G25910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00824 | 70974 | 72808 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000824s00026005.1 | PF01090.14 | Ribosomal_S19e | 6 | 140 | 1.50E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 84.060 |
| SRR1783600 | control | 85.314 |
| SRR1783602 | moderate drought stress | 85.060 |
| SRR1811619 | moderate drought stress | 84.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 231.722 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 231.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 157.954 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 153.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 199.337 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 200.648 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.453 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 572.805 |
| SRR2868004 | Drought Stress (root) | 366.416 |
| SRR2967015 | Control (root) | 341.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 192.587 |
| SRR9715740 | Leaf | 228.308 |
| SRR9715741 | Leaf | 142.790 |
| SRR9715739 | Root | 545.866 |
| SRR9715742 | Root | 246.638 |
| SRR9715743 | Root | 305.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 624.861 |
| SRR8749028 | MeJA induced 9h | 253.902 |
| SRR8749029 | MeJA induced 9h | 395.134 |
| SRR8749030 | Uninduced | 85.325 |
| SRR8749031 | Uninduced | 46.682 |
| SRR8749032 | Uninduced | 107.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 434.630 |
| SRR8400027 | Control - Root | 366.898 |