Gene detail

Gene detail information of Glyur000824s00026000

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27190.1	4.00E-54	NB-ARC domain-containing disease resistance protein
NR	XP_003598445.1	0	Cc-nbs resistance protein [Medicago truncatula]
COG	YP_001869272.1	2.00E-09	Miro domain-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9T048\|DRL27_ARATH	1.00E-61	Disease resistance protein At4g27190
trEMBL	tr\|G7IYN4\|G7IYN4_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES68696.1}

Sequence

Transcript Sequence

>Glyur000824s00026000.1
ATGGATGCTATTGCTAGCATAGCATCAAATGTGGCTACACCTATCCTAAGACAGCTCACCTATGTGTTGATGTACAACAGTAACCTCAGTGACCTTGAGACTCAGATCCAGAAGCTGCAGAGGGAGGAGAAAGAGGTGAGGCACACCGTTGAGGCCGCCAAGAGGAGCGGNGAGGAGATCGAAGACACCGTGCGCGACTGGTTTTCAAGAGTGCATGCAGCTATAGAAGAGGCAAATGCGTTCCTCCGCGAGGAAGACCAGGAAAGAGTCGGTTGCTTAGACGTGTACTCGAGGTACACGTTGAGCCAGAGAGCCAGGAACTTGGGGGATTTTCTGTGTGAGATCAGAAAAGAAACATTTGATAGGGTTTCTTACAGANGTGCCTTGAAATGTAACTTTAGTTCTTCTGCTAGATGCTATGAGGCCTTGGAATCCAGAACAACAATGTTGAATGAAATTATGCAATTGTTAAAAAATGATGCTTGTGTTCACATGATTGGTGTGTATGGAATGGCTGGGGTTGGTAAGACTGCATTGGTGAAAGAACTGGCATGGCAAGCTGAGAAAGATGGTTCATTTGATGTGGTGGTGATGGCTACCGTGACCAATTCTCCGGATGTGAGAACGATCCGAGCCGAAATTGCTGATGGGTTGGGTCTGAAATTTGATGAGCTGACTGAGATGGGGCGTGCGAGCCGGTTACGCCAGAGGATTAGGCAGGAGGGGACGATTCTTGTCATACTGGATGATGTTTGGGGAAGGCTTGACTTGACTGAGGTTGGTGTTCCTTTTGGTGAGGACCATGAAGGCTGCAAATTGTTGGTGACATCAAGAGATCTTAATGTGTTGACTGCTAACTTGGGTGCACAGAAGGTTTATAGACTTGAGGTTTTGTCTGAGGATGAGAGTTGGAGCTTGTTTGAAAAGAGGGGAGGGGATGCTGTTAAAGATCCTACCATTCAGCCTGTAGCAATTGAAGTAGCCAAAAGCTGTGCTGGTTTGCCCCTTTTGATAGTTACTGTGGTGGAGGCATTGAAGAACAAGGATTTGTATGCTTGGAAGGATGCACTAGAGCAGATAACAACCTTTGAGCTTGATGGATGCTTTTATTCTCAAGNGCATTCTGCGATTGAGCTGAGCTATGATAGTTTGGAAAGCCAAGAACTCAAAACATTCTTCCTTCTTTTGGGTTCAATAGGAAGTGATTATGGCATCAAGGACTTGTTGGTGCTTGGTTGGTGTTTGGGTTTGCACAAACATGTTTATACTTTGGCTGATGGGAGAAACAGACTTTACAATTTGATAGACAACCTGAGAGCTGCCTGTTTGTTGCTTGAAGGGGAAAGAGATTCGGTTGCGGTGCACGAAGTTGTTCGCAACGTGGCTGCATCCATTGCGTCCAGGATCAAACCATTCTTCACCGTGCAGAGGAATGCTGAACTGAAAGAATGGCCAAGAAGCGATTTCCTTAAAACTTGCCACCATATTTTCTTGGACTGGTGTTTTATCCATGAACTTCCTGAGAGGTTAGAATGTCCTAAATTGAAGATACTCCAACTCAACTGTCAAGGTAACTACTTGAAAGTTCCTGATGATTTCTTTGATCAGATGAAAGAACTCAAGGTACTAAGTTTAGGAGGTGTGAATTGTATACCTTCCCTTCCTCCATCACTTGCTCTCTTGACAAACCTCCAAGCATTGAATCTGTGTAAATGCATGTTGGAAGACATAGCAATTGTTGGAGAAATCACAAGTTTAGAGATTCTCAGCCTTGAAAAATCTGAGATTAGAGAGCTCCCCGCTGAAATAGGACAACTGATTCGTCTCCGGTCGCTGGACTTGACCGATTGCTCAACACTAAAGGCAATACCTTGCAACCTGATATCAAGCTTGACAAGCTTAGAAGAGCTCTATATGGGGAACTGTAATATTCAATGGGAGGTCAAGGGAACTGAAAACCAAAACAAAAACAATAATTCAAGTCTAAGCGAGTTAGGACATTTGCATCAACTAACAACTTTGAACATGCAGATTAAAGAAACTTCAGTTTTTCCTAGAGACTTGCTTTCCTTTGGTAAACTAGAAAGCTACAAGATTTTGATTGGGGATGGATGGAAATGGTCTGGGGTAGAGTCTGGGAACTACAAAAGTTCAAGAGTTCTTAAGCTTAATCTGAGCATGGATCCAAGGATTCTCATGGATTACGGGATAAAGTTGTTGACCACGCGCGCTGAAGATTTGTATTTAGCCGAACTGAAGGGTGTCAAGGAAGTACTTTATGAATTGAATGATGAGGGATTTTCACACTTGAAGCATCTTAATATCCAAAACTGTGATGAAATGGAGAGCATTATCGGCTCAACCGAGTGGTCTCATCATGATCACGCCTTCCCCAACTTGGAGTCTTTGATCCTTNACAATCTGATTAAACTGGAGAGAATATGCAGTGCACCACTTCCATCACAGGCCTTTACCAAACTACAAGTTATCAAAGTAAANGGTTGTGATGTGATGGAGTTTGTTTTCTTGCATTCCTTGGTTAAACACCTTTCTGAACTTCTTGAAATTGAGATTTCTGAATGTAAGTTTATGACTTATATCATAGCCAAGCAAAGTCAAGAGGATCCTTCTGCTGGACAAACTGACAAGATCAGGCTCCCCAAAATGCGTTCTCTCACGCTCGAATCCTTACCTTCCCTTGTTAGTCTCTCTCCCGAGTCATGTGTTAAGGGTACCGAAAACAACAATGATTTCGCCAGTCAACTTTTGAGTGATAAGGTTGAATTTCCGAGTTTAGAGACCTTGAAGATTTACTCAATCAATGTCCAGAAGATATGGGATGACCAACTTTCAGCAAATTCTTGCTTTCAAAATTTGACCAAGTTGACCATAGATGGTTGTGAAAGGTTGACACACCTTTTTTCATACTCAGTGGCTGTAAGACTGGTCAAACTTGAACATCTTTTAATTAGTTCATGCAAATTGGTAGAGAAGATATTTGTCCCAGAGGAAAATATGGGTAACCTTCATCATGCTAGAAAATCTCTTCCTGATGAAATGGTTCCAATTTTTCCCAACTTGGAGACATTTGTGATTTCTCACATGGACAGCTTGAAGTCAATATGGCCCAACCAACTCACTCAAAATTCCTTTTGCAAATTGAAAAAAATGGAAATCACATCCTGTGACCAACTCTTGAATGTGTTCCCAAGCCATGTGCTAAACAAATTACAAAGCCTTGAATCATTGAATTTATGCTACTGTATTGCACTGGAAGTTGTGTATGAAATAGATGGTACAAACACAGAAGGTACAAGTCAGTTAGAGATGCATATTCCACTGAGAACTTTGTCTTTGGGCCATTTACCAAAGCTAAAGTATTTGTGGAATAAGGATCCTCAAGGAAATATCAAGTTCCAAAACCTGTTTATGGTGAAAGCTACTAAATGTGGAAGTCTAAAACATGTCTTTCCACTTTCTGTGGCCAAAGATCTTTTGCAACTCCAAGTCCTTGACATAAGTGATTGTGGGGTAGAGGAAATTGTTGCAAAGGATCAAGGAGGGTCAGAGGNAGATCTTGGTCTTGTTTTCCCAAAATTAGTATCCTTGAAGCTTTTGAATTTGCCAGAACTTCGATGCTTCTGTACCGGAAATCACAACTTCAGGTTCCCATTGCTGAATAAGCTATATGTAGTTGAGTGTCCTGCAATGGAGACTTTCTCTCAGGGAATCTTAAGGGCATCAATTCTCAGAAGAATATATTTGACTCAGAATGGAGATCAGTGATTTTCAAGGAAGACCAAACGGTTCTTAGAAATCCAGAGGCTGAAATAGCTAATTCTTTGCCTGCACCCTGCTGTTTAATGGTGTGACANAGTCTTCTGATTCCACTTGAATTCTTTGGGTGACTTTCACAAAAGGCCAACTGGTTTATTGGCTCCCTTTCATTTGTGCTGTGGAACATGAATCTGTACTTTAGATTCCTTGCTTTGAGATGGAAGGGACNGTGAATTCTGATGTTGAGTAAGTTTTTCAAGCCAACATGATGAAAGATAAAGATTTAGTTCTGGAGGGGTAATTTCTGTTTGTGTGCTTT

Protein Sequence

>Glyur000824s00026000.1
MDAIASIASNVATPILRQLTYVLMYNSNLSDLETQIQKLQREEKEVRHTVEAAKRSGEEIEDTVRDWFSRVHAAIEEANAFLREEDQERVGCLDVYSRYTLSQRARNLGDFLCEIRKETFDRVSYRXALKCNFSSSARCYEALESRTTMLNEIMQLLKNDACVHMIGVYGMAGVGKTALVKELAWQAEKDGSFDVVVMATVTNSPDVRTIRAEIADGLGLKFDELTEMGRASRLRQRIRQEGTILVILDDVWGRLDLTEVGVPFGEDHEGCKLLVTSRDLNVLTANLGAQKVYRLEVLSEDESWSLFEKRGGDAVKDPTIQPVAIEVAKSCAGLPLLIVTVVEALKNKDLYAWKDALEQITTFELDGCFYSQXHSAIELSYDSLESQELKTFFLLLGSIGSDYGIKDLLVLGWCLGLHKHVYTLADGRNRLYNLIDNLRAACLLLEGERDSVAVHEVVRNVAASIASRIKPFFTVQRNAELKEWPRSDFLKTCHHIFLDWCFIHELPERLECPKLKILQLNCQGNYLKVPDDFFDQMKELKVLSLGGVNCIPSLPPSLALLTNLQALNLCKCMLEDIAIVGEITSLEILSLEKSEIRELPAEIGQLIRLRSLDLTDCSTLKAIPCNLISSLTSLEELYMGNCNIQWEVKGTENQNKNNNSSLSELGHLHQLTTLNMQIKETSVFPRDLLSFGKLESYKILIGDGWKWSGVESGNYKSSRVLKLNLSMDPRILMDYGIKLLTTRAEDLYLAELKGVKEVLYELNDEGFSHLKHLNIQNCDEMESIIGSTEWSHHDHAFPNLESLILXNLIKLERICSAPLPSQAFTKLQVIKVXGCDVMEFVFLHSLVKHLSELLEIEISECKFMTYIIAKQSQEDPSAGQTDKIRLPKMRSLTLESLPSLVSLSPESCVKGTENNNDFASQLLSDKVEFPSLETLKIYSINVQKIWDDQLSANSCFQNLTKLTIDGCERLTHLFSYSVAVRLVKLEHLLISSCKLVEKIFVPEENMGNLHHARKSLPDEMVPIFPNLETFVISHMDSLKSIWPNQLTQNSFCKLKKMEITSCDQLLNVFPSHVLNKLQSLESLNLCYCIALEVVYEIDGTNTEGTSQLEMHIPLRTLSLGHLPKLKYLWNKDPQGNIKFQNLFMVKATKCGSLKHVFPLSVAKDLLQLQVLDISDCGVEEIVAKDQGGSEXDLGLVFPKLVSLKLLNLPELRCFCTGNHNFRFPLLNKLYVVECPAMETFSQGILRASILRRIYLTQNGDQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00824	28696	33632	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000824s00026000.1	PF00931.17	NB-ARC	147	405	7.40E-46
Glyur000824s00026000.1	PF13855.1	LRR_8	513	572	5.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.965
SRR1783600	control	6.910
SRR1783602	moderate drought stress	6.894
SRR1811619	moderate drought stress	6.636

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.672
DRR006520	Root Summer glycyrrhizin high producing strain	1.692
DRR006521	Root Winter glycyrrhizin high producing strain	0.016
DRR006522	Root Winter glycyrrhizin high producing strain	0.027
DRR006523	Root Summer glycyrrhizin low producing strain	1.504
DRR006524	Root Summer glycyrrhizin low producing strain	1.541
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.091
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.747
SRR2868004	Drought Stress (root)	16.360
SRR2967015	Control (root)	16.318

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.930
SRR9715740	Leaf	1.732
SRR9715741	Leaf	3.628
SRR9715739	Root	1.447
SRR9715742	Root	8.159
SRR9715743	Root	6.727

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.924
SRR8749028	MeJA induced 9h	1.787
SRR8749029	MeJA induced 9h	0.302
SRR8749030	Uninduced	0.153
SRR8749031	Uninduced	0.167
SRR8749032	Uninduced	0.202

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.985
SRR8400027	Control - Root	21.121