Gene detail

Gene detail information of Glyur000823s00027904

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20420.1	2.00E-76	RNAse THREE-like protein 2
NR	XP_004491416.1	2.53E-140	PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum]
COG	YP_006371019.1	1.00E-19	RNAse III [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q9LTQ0\|RTL2_ARATH	6.00E-94	Ribonuclease 3-like protein 2
trEMBL	tr\|A0A072TPL1\|A0A072TPL1_MEDTR	2.00E-133	Ribonuclease III domain protein {ECO:0000313\|EMBL:KEH19419.1}

Sequence

Transcript Sequence

>Glyur000823s00027904.1
ATGGAAGCCTCAGTACTGGTGGCAGTGGAGGAAATAATCGGATACACATTTCGGAACACGAAGCTTCTAGAAGATGCCTTAACCCACTGCTCAGTCGTCGATGCTGTCTCCTACGAGCGCCTCGAGTTCCTTGGCGACGTCGTTTTGGGCCTCGCCATAAGCAACCACCTCTTCATGGCCCACCCTTCCCTTGACCCAGGACAGCTCTCTCTCCTCCGCGCCGCTAACGTCAGCACCGAGAAGCTCGCTCGCGTCGCAGTCCGCCATGGTCTCCACCGCTTCGTCCGCCACAGCTCCCCTCCTCTCGTCGACAAGGTCACGGAGTTTGTCGATGCCGTCGCCGAAGAGCATGATGTCGTCGTCTATGGTGGGTTGGTGAAAGCTCCTAAGATTCTAGCGGACATTGTTGAGTCTGTGGCCGCTGCTGTTTATGTGGACGTTGGTTTTGATCTTCAAAAATTATGGGTGCCGATAGTGACATTAGGTGATCTAGAGCAACAACCCCAACCGGTGACGATGCTCTTCGAGATTTGCCAAAAGAATGGGAAAGAGGTTGACATCAAACACCGGAGGAACGGTGACAAAAGCATTGCTAGTGTCTATGTTGATGGACATTTGGTTGCCTCTGCCTTCTCTGATCAGAAGGACATTGCGAGGCTGGACGCTGCCAAGATTGCCCTTCATAAACTAGCACATGTACTGCCCGCCAGCACCATGAAGCTTGACTTTTGTGCTGGCGTTGACGGTACCTTTGAGATTGAAGCAGCCAAGAACAAGTTACATAAACTTTGTGCGATGAAAAAAGTGGCCCAAACCAGTATTCAAAAGTGCATCTTCATGTCTTCTGGTTTCCTCTTCATTGAGAAAGACGTAGGTCCTCCTCATGATAAGAAATTTGTCTGCTCTGTCCAGATAGTGACTTCAGCTGCTCTTCTCCTTGTCATCACAACCTTTTTGCCTTCCTCTCTGAGGCCTAGCTACCTTTACTTCATCTTTAATGTCCTAATCATTGCACTTGGTGCTGAAGCAGGTCTTCTTTCAGCTTTTTCTGAGCCTCTAGAAGACAGAAAGCAAGCTGTAAATGTAATAACGCCCCATGAGGAAGAGGTAATACCAGAGGAGAGGGAAGCTTCCAAAATAACCAGTGGAAGTTCTGTCTCAGAACATAACGAAAAGAAGCCAAAGGTTGCTGAAAAGTATGCATGCGATGAGAAGATTGNTTTTGGTGTCACTGAAGTAGATAAAGTGAAAAATTGTCCTTCAATGCCAAGCCTTTTCTTTGTAGGAGGTGGAGAAGAAGCTGAGTTAGAAGTGATGGATGAGGAGGTTGAAGCAGAAGATGAGAGTGGGGGTCCGATAGTGACATTNGGTGATCTAGAGCAACAACCCCAACCGGTGACGATGCTCTTCGAGATTTGCCAAAAGAATGGGAAAGAGGTTGACATCAAACACCGGAGGAACGGTGACAAAAGCNTTGCTAGTGTCTATGTTGATGGACATTTGGTTGCCTCTGCCTTCTCTGATCAGAAGGACATTGCGAGGCTGGACGCTGCCAAGATTGCCCTTCATAAACTAGCACATGTACTGCCCGCCAGCACCATGAAGCTTGACTTTTGTGCTGGCGTTGACGGTACCTTTGAGATTGAAGCAGCCAAGAACAAGTTACATGAACTTTGTGCGATGAAAAAGTGGCCCAAACCNATAGTGACTTCAGCTGGTATCCTCCAAATGTTAGGGGATGAAAAGCCTCGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00823	39786	50990	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0004525 ribonuclease III activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000823s00027904.1	PF00636.21	Ribonuclease_3	39	148	1.70E-21
Glyur000823s00027904.1	PF00035.20	dsrm	170	230	1.60E-06
Glyur000823s00027904.1	PF00035.20	dsrm	465	525	1.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.882
SRR1783600	control	28.019
SRR1783602	moderate drought stress	54.072
SRR1811619	moderate drought stress	53.529

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.412
DRR006520	Root Summer glycyrrhizin high producing strain	8.282
DRR006521	Root Winter glycyrrhizin high producing strain	0.950
DRR006522	Root Winter glycyrrhizin high producing strain	0.821
DRR006523	Root Summer glycyrrhizin low producing strain	14.696
DRR006524	Root Summer glycyrrhizin low producing strain	14.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.547

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.061
SRR2868004	Drought Stress (root)	11.186
SRR2967015	Control (root)	15.721

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.405
SRR9715740	Leaf	4.273
SRR9715741	Leaf	6.299
SRR9715739	Root	13.486
SRR9715742	Root	12.238
SRR9715743	Root	9.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.830
SRR8749028	MeJA induced 9h	3.873
SRR8749029	MeJA induced 9h	4.021
SRR8749030	Uninduced	2.702
SRR8749031	Uninduced	0.690
SRR8749032	Uninduced	1.705

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.654
SRR8400027	Control - Root	12.525