Gene detail information of Glyur000823s00027901 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25290.2 | 4.00E-61 | Auxin-responsive family protein |
| NR | XP_004491418.1 | 0 | PREDICTED: uncharacterized protein LOC101511510 [Cicer arietinum] |
| Swissprot | tr|Q9LSE7|B561C_ARATH | 3.00E-74 | Cytochrome b561 and DOMON domain-containing protein At3g25290 (Precursor) |
| trEMBL | tr|G7K8L9|G7K8L9_MEDTR | 0 | Auxin-responsive family protein {ECO:0000313|EMBL:AET00572.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00823 | 396 | 3001 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000823s00027901.1 | PF04526.8 | DUF568 | 93 | 210 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.314 |
| SRR1783600 | control | 0.398 |
| SRR1783602 | moderate drought stress | 0.324 |
| SRR1811619 | moderate drought stress | 0.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.998 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.251 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.120 |
| SRR2868004 | Drought Stress (root) | 2.672 |
| SRR2967015 | Control (root) | 2.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.829 |
| SRR9715740 | Leaf | 0.074 |
| SRR9715741 | Leaf | 0.374 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.170 |
| SRR9715743 | Root | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.163 |
| SRR8400027 | Control - Root | 1.131 |