Gene detail

Gene detail information of Glyur000822s00038921

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39730.3	1.00E-149	rubisco activase
NR	NP_001242531.1	0	ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like [Glycine max]
COG	YP_007111326.1	4.00E-86	ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema sp. PCC 7407]
Swissprot	tr\|O98997\|RCA_VIGRR	0	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Precursor)
trEMBL	tr\|I1M841\|I1M841_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07270.1}

Sequence

Transcript Sequence

>Glyur000822s00038921.1
CAACCTCAAGGTGTAGGCAGAACAAGACTAAGAGCTTGCAGGCAATGTATGCTTGCCACGTGGCATCAGTGGCAATCTTCATTGTGTGGTCGCCAGAGCCTCTGTGGCCAATCCTGTTGCTGTTATAAAGTTCCCCCNTTCTTGGTCATAAGCTTGCATCGAATATTTTGCTTCAAAGCAGAGATACCTTCTAATTAATTCCCCCTTCTTTGCAACTNCAATCTGAACACACATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAAAACTCCTCTGAGCTTGAACGGCTCTGGAGCTGGAACTTCAGTTCCAAGTTCAGCTTTCTTTGGCACTAGCTTGAAGAAGGTTACCTCCTCAAGACTCCCCAACGCCAAGGTTTCCTCTGGAAGCTTCAAGATTGTTGCTGCGGAGATTGATGAGGACAAGCAGACCGAGAAAGACAGATGGAAGGGTCTGGCCTATGATATTTCAGATGACCAACAGGACATCACAAGGGGGAAGGGTATGGTTGATAGCCTATTCCAAGCTCCACAACAAGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACATTAGCACTGGACTTCGCGAGTTCCTCTCATTCTTGGTATATGGGGAGGCAAAGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCACGGGAGCCTGCAAAGTTGATTAGGCAGAGATACCGTGAAGCTGCTGATATAATTAAGAAGGGAAAGATGTGTTGTCTGTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGAACCACACAGTACACTGTGAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCCACAAATGTCCAACTCCCAGGCATGTACAACAAGGAAGAGAACCCTCGTGTGCCCATCATTGTCACCGGTAACGATTTCTCGACATTGTATGCTCCTCTCATTCGTGACGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGACGACCGTGTTGGTGTCTGCAAGGGGATTTTCCGCAATTTCTTTGGTGCACTTCGGGCTAGGGTATATGACGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGATAGTGTTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGAGCAACCCAAGATGACATTGGACAAGCTCTTGGAGTATGGCAACATGCTTGTCCAAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCAGACAAGTACTTGAGTGAGGCTGCTCTTGGTGATGCTAACGAAGATGCCATTAAGAGGGGGGCTTTCTAATCTCTGCCTCCTTGAACTAGAGGCCTTCATTGCAGGCATAACAGCTAAATCATGTTCCTGAAGGTTGTATTGATCCAAATGCCTCAAACTTCGATCCAACTACTAGAAGTTGTGATGGCACGTGCGTATAAAATTCTAAGCATTCTCAAGTGTTAGGTGGATGGAGAAGATTCCAACTTTGAAATAATTTTATTTTACTTTTCATATTGGACTGTCTTCCTGTATGATTTTGAGTTATATCATGCACAATGTTAAATTGAATTTGGTGTCTTTCTCTTTCAGCCTATCCCTTTGAGTTTTTTCTTTTCTAGATTTAATTATTTGTTTTAGAAGAAGGTATTAATACCCTATCTAGTCATTTTAGCTACTTCCAAGTGCTAATGATCTCATGAACCTTAAGTTTATGATAAACTCATAGTTGAATAAGAAATATTTGCAGAAGAAAATTGATAGAGATGATCGAATGAAACTGATACTTCATTGATAATGGGTAAATACAAGAGAAAGGTATTTAAACAACCATAAGCTAGGCTGCACCTTATTACATCAAAAGAAATCCTAAAATATCAAAATAGAAAATCTGATGAAATATGAGAAAATCCCAAATTTGATAACTCAGCAAAACTGTAAAACATGATCTGTTCATGATTCCTTTTACCCATCCATTTCCTCATCAACCGTGTGGCACTCATTGCAAACAACATCAACCTTACATAATTCTAGAACATTCTTCAAATTTGCTTCCATGTTAGCTTTGGGTTGCACCTCAACCTACATGTGAAGTTTCTACATCATCCTCCTCCTTCATGTTTAACATCCCCACCGCAAGCTAGAGCATACCCATCAAGCCTAGCTTGGAAATAAATGGAACAAAAATACTGGGTGGTAGAGCTTTTGTGAAAAAGTCTACAAGTTGAGACTCAGAGGCAATAGGCAGCAACTTCAATGTCCCATTCCGCACCTTTTCCCTAACAAAATGGCAATCAATTTCAAGATGTTTGGTTCTCTCATGGAAAACCAGATTAGCTGCAATATGAATGGCATTCTGATTGTTACAATATAAGATTGGAGGTCGATGGCATGTCACCTTTAAATCAGAAAGTAGGTACANGATCCATTGCAATTCACATGATGTAGTGGACAAGGCTCTATATTGAACTCCTTCCCAAACACTCCTTCAAACTGTTTCCTACAAGAATTACATCATCCATATAAACCAAAAGAGCAGTGAACTCATTTTCACTATTGTGAGTGAACAAAAAGTAAGTTGAGGTTGATTGGTTGTAGCCCTGTTTGACAAGTAAAGAGGTCAACTTCTTATACCATTTCGTTCTTGCTTGTTTGAGACCATATAAAGATTTCTTCAATTTGCAGACTTGATTTTCTTTCATGCAAATCACCCCTTCAGGCACCTCCATGTACACATCCTCATTCAAATCACCATGTAAAAATGCATTATTTACATCAAGTTGATGTAAATACCAATTATGCATGGAGGCGATAGCAAGAAGTACCCTCACAGTTGTTAACTTCGCCACAAGACTAAAGGTATCAAAGAAATCCAGCCCTTTAACTTGGTTATAGCATTTGGCCACCAGTCTTGCCTTGTACCTTTCTGTTGTGCCATCTTCTGCCTCTTGTTTTATCTTGTAAACCCATTTACTTCCTATATTGGCTTGACATTTGGAGGCAAGTCTATTATTTCCCATGTACCATTTTTCTCCAAACCCAGCAACTCAGCTTTCATAGCATCAGTCCAGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00822	45867	51959	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000822s00038921.1	PF00004.24	AAA	152	255	3.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.071
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.578
DRR006520	Root Summer glycyrrhizin high producing strain	0.493
DRR006521	Root Winter glycyrrhizin high producing strain	0.432
DRR006522	Root Winter glycyrrhizin high producing strain	0.356
DRR006523	Root Summer glycyrrhizin low producing strain	0.294
DRR006524	Root Summer glycyrrhizin low producing strain	0.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	1222.911
DRR006526	Leaf Summer glycyrrhizin high producing strain	1217.612

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.827
SRR2868004	Drought Stress (root)	3.366
SRR2967015	Control (root)	0.079

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2428.440
SRR9715740	Leaf	2522.788
SRR9715741	Leaf	1979.733
SRR9715739	Root	0.589
SRR9715742	Root	2.555
SRR9715743	Root	1.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.017
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.164
SRR8400027	Control - Root	0.540