Gene detail information of Glyur000821s00020794 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07090.1 | 2.00E-61 | Protein of unknown function (DUF640) |
| NR | KEH31304.1 | 4.09E-102 | G1-like protein [Medicago truncatula] |
| Swissprot | tr|Q9LMK2|LSH6_ARATH | 4.00E-81 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 |
| trEMBL | tr|A0A072UNC2|A0A072UNC2_MEDTR | 2.00E-102 | G1-like protein {ECO:0000313|EMBL:KEH31304.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00821 | 86041 | 86805 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000821s00020794.1 | PF04852.7 | DUF640 | 33 | 162 | 3.20E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.350 |
| SRR1783600 | control | 7.190 |
| SRR1783602 | moderate drought stress | 7.555 |
| SRR1811619 | moderate drought stress | 7.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.610 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.754 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.130 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.421 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.810 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.813 |
| SRR2868004 | Drought Stress (root) | 36.459 |
| SRR2967015 | Control (root) | 24.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.775 |
| SRR9715740 | Leaf | 2.782 |
| SRR9715741 | Leaf | 0.876 |
| SRR9715739 | Root | 11.084 |
| SRR9715742 | Root | 7.192 |
| SRR9715743 | Root | 10.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 135.572 |
| SRR8749028 | MeJA induced 9h | 66.490 |
| SRR8749029 | MeJA induced 9h | 40.804 |
| SRR8749030 | Uninduced | 54.030 |
| SRR8749031 | Uninduced | 15.250 |
| SRR8749032 | Uninduced | 19.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.315 |
| SRR8400027 | Control - Root | 22.247 |