Gene detail information of Glyur000821s00020786 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62260.1 | 0 | mitochondrial editing factor 9 |
| NR | XP_004504743.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g62260, mitochondrial-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|O04590|PPR88_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g62260, mitochondrial (Precursor) |
| trEMBL | tr|I1KR83|I1KR83_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G08250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00821 | 54173 | 56164 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000821s00020786.1 | PF13041.1 | PPR_2 | 77 | 106 | 2.10E-07 |
| Glyur000821s00020786.1 | PF12854.2 | PPR_1 | 140 | 170 | 4.30E-08 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 175 | 203 | 0.0016 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 208 | 228 | 0.83 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 245 | 267 | 8.50E-06 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 288 | 316 | 7.50E-07 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 319 | 345 | 4.80E-07 |
| Glyur000821s00020786.1 | PF12854.2 | PPR_1 | 346 | 376 | 1.60E-05 |
| Glyur000821s00020786.1 | PF13041.1 | PPR_2 | 378 | 425 | 1.20E-08 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 453 | 476 | 0.011 |
| Glyur000821s00020786.1 | PF13041.1 | PPR_2 | 479 | 525 | 1.20E-09 |
| Glyur000821s00020786.1 | PF01535.15 | PPR | 557 | 578 | 0.51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.062 |
| SRR1783600 | control | 1.022 |
| SRR1783602 | moderate drought stress | 1.509 |
| SRR1811619 | moderate drought stress | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.849 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.616 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.655 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.775 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.746 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.075 |
| SRR2868004 | Drought Stress (root) | 0.613 |
| SRR2967015 | Control (root) | 0.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.617 |
| SRR9715740 | Leaf | 1.008 |
| SRR9715741 | Leaf | 0.599 |
| SRR9715739 | Root | 0.449 |
| SRR9715742 | Root | 1.018 |
| SRR9715743 | Root | 1.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.106 |
| SRR8749028 | MeJA induced 9h | 3.343 |
| SRR8749029 | MeJA induced 9h | 1.951 |
| SRR8749030 | Uninduced | 0.619 |
| SRR8749031 | Uninduced | 0.423 |
| SRR8749032 | Uninduced | 0.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.578 |
| SRR8400027 | Control - Root | 1.282 |