Gene detail

Gene detail information of Glyur000821s00020785

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43170.9	0	ribosomal protein 1
NR	XP_010106863.1	0	60S ribosomal protein L3 [Morus notabilis]
COG	NP_247144.1	3.00E-70	50S ribosomal protein L3P [Methanocaldococcus jannaschii DSM 2661]
Swissprot	tr\|P35684\|RL3_ORYSJ	0	60S ribosomal protein L3
trEMBL	tr\|W9S5Y9\|W9S5Y9_9ROSA	0	60S ribosomal protein L3 {ECO:0000313\|EMBL:EXC12323.1}

Sequence

Transcript Sequence

>Glyur000821s00020785.1
CCTTGTCGCGCAGCTGGTACGTCTGCAATCTGTTCGATGTTCTGTTACTTAGAGATGGATCTGTTAATGTTTTCGCTGTCTCAGTTTAGTATGCNCGATTATTAATGCTTATATTTTGAGCTTGACAGCTTTTTCAGTTGAAGTAAGAAAAAATGTCTCACAGGAAGTTCGAGCACCCGAGACACGGTTCCCTTGGCTTCCTCCCAAGGAAGCGAGCTTCTCGTCATCGTGGGAAAGTGAAGGCTTTCCCAAAAGATGATCCCAGTAAGCCATGCAGGTTGACTGCCTTTGTGGGCTATAAGGCTGGGATGACCCACATTGTNAGAGAGGTCGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCTCCATTGGTTGTTGTTGGGGTGGTGGGATATGTCAAGACACCTCGAGGTCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGAAGTCAAGAGACGATTTTACAAGAACTGGTGCAAATCTAAAAAGAAGGCTTTTACCAAATATACAAAAAAATATGAGACTGAGGAAGGAAAGAAAGATATTGAATCTCAACTGGAGAAATTGAAAAAGTATGCAACTGTCATCCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAAGGTCTAAAACAGAAGAAAGCACATTTGATGGAGATTCAAGTTAACGGTGGGACAATTGCCCAGAAGGTGGACTNTGCATACAGCTTCTTCGAGAAGCAAATCCCAGTGGAGGCTGTTTTCCAAAAAGATGAGATGATAGATATCATTGGTGTGACTAAGGGTAAAGGCTACGAAGGGGTTGTAACCCGTTGGGGTGTCACTCGTCTTCCACGGAAGACTCACAGAGGTCTAAGGAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCTCGTGTTTCNTTCACAGTTGCCAGGGCTGGTCAAAATGGATATCACCATCGTACTGAGTTGAATAAAAAGATCTACAAGGTTGGCAAGTNAGGCCAAGAGACACATGCAGCCATCACTGAATTTGACAGGACGGACAAGGATATTACTCCCATGGGTGGATTCCCTCATTATGGTGTGGTGAAGGATGATTATATTATGGTCAAGGGATGCTGTGTTGGACCCAAGAAGCGGGTTATCACTCTTCGTCAGTCCTTACTCAAGCAGACATCTCGTGTGGCTCTTGAAGAGATCAAACTGAAGTTCATTGACACCTCATCCAAGTTTGGACATGGCCGCTTCCAGACTACTCAGGAGAAGCAGAAGTTTTATGGTCGGTTGAAGGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00821	48333	51795	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000821s00020785.1	PF00297.17	Ribosomal_L3	50	343	3.10E-122

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.546
SRR1783600	control	13.747
SRR1783602	moderate drought stress	6.562
SRR1811619	moderate drought stress	6.374

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.572
DRR006520	Root Summer glycyrrhizin high producing strain	6.409
DRR006521	Root Winter glycyrrhizin high producing strain	4.192
DRR006522	Root Winter glycyrrhizin high producing strain	4.313
DRR006523	Root Summer glycyrrhizin low producing strain	41.007
DRR006524	Root Summer glycyrrhizin low producing strain	40.894
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.186

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.731
SRR2868004	Drought Stress (root)	26.283
SRR2967015	Control (root)	25.591

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.305
SRR9715740	Leaf	12.018
SRR9715741	Leaf	11.010
SRR9715739	Root	1.571
SRR9715742	Root	5.999
SRR9715743	Root	4.530

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.711
SRR8749028	MeJA induced 9h	36.503
SRR8749029	MeJA induced 9h	68.918
SRR8749030	Uninduced	3.741
SRR8749031	Uninduced	7.617
SRR8749032	Uninduced	8.524

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.854
SRR8400027	Control - Root	14.424