Gene detail information of Glyur000820s00032900 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25450.1 | 9.00E-44 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003591799.1 | 1.21E-81 | 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SKK4|GSL_ARATH | 2.00E-51 | Probable 2-oxoacid dependent dioxygenase |
| trEMBL | tr|G7I469|G7I469_MEDTR | 5.00E-82 | Uncharacterized protein {ECO:0000313|EMBL:AFK34307.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00820 | 70433 | 74384 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000820s00032900.1 | PF14226.1 | DIOX_N | 64 | 174 | 5.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.058 |
| SRR1783600 | control | 14.158 |
| SRR1783602 | moderate drought stress | 10.544 |
| SRR1811619 | moderate drought stress | 9.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.347 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.345 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.462 |
| SRR2868004 | Drought Stress (root) | 18.959 |
| SRR2967015 | Control (root) | 19.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.461 |
| SRR9715740 | Leaf | 0.081 |
| SRR9715741 | Leaf | 1.503 |
| SRR9715739 | Root | 6.039 |
| SRR9715742 | Root | 4.219 |
| SRR9715743 | Root | 4.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 94.695 |
| SRR8749028 | MeJA induced 9h | 89.864 |
| SRR8749029 | MeJA induced 9h | 41.139 |
| SRR8749030 | Uninduced | 64.942 |
| SRR8749031 | Uninduced | 26.211 |
| SRR8749032 | Uninduced | 25.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.933 |
| SRR8400027 | Control - Root | 9.731 |