Gene detail information of Glyur000820s00032897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25450.1 | 2.00E-45 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003591799.1 | 2.47E-80 | 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SKK4|GSL_ARATH | 4.00E-53 | Probable 2-oxoacid dependent dioxygenase |
| trEMBL | tr|G7I469|G7I469_MEDTR | 9.00E-81 | Uncharacterized protein {ECO:0000313|EMBL:AFK34307.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00820 | 45888 | 50466 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000820s00032897.1 | PF14226.1 | DIOX_N | 63 | 173 | 1.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.647 |
| SRR1783600 | control | 0.608 |
| SRR1783602 | moderate drought stress | 0.438 |
| SRR1811619 | moderate drought stress | 0.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.512 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.334 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.121 |
| SRR2868004 | Drought Stress (root) | 6.513 |
| SRR2967015 | Control (root) | 4.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.488 |
| SRR9715740 | Leaf | 3.296 |
| SRR9715741 | Leaf | 2.274 |
| SRR9715739 | Root | 0.014 |
| SRR9715742 | Root | 0.490 |
| SRR9715743 | Root | 0.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.776 |
| SRR8749028 | MeJA induced 9h | 2.985 |
| SRR8749029 | MeJA induced 9h | 1.880 |
| SRR8749030 | Uninduced | 2.523 |
| SRR8749031 | Uninduced | 1.208 |
| SRR8749032 | Uninduced | 0.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.167 |
| SRR8400027 | Control - Root | 1.496 |