Gene detail information of Glyur000819s00036706 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15790.2 | 1.00E-27 | RING/U-box superfamily protein |
| NR | AFK40980.1 | 9.36E-67 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 4.00E-29 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|I3SL38|I3SL38_MEDTR | 3.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK40980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00819 | 40962 | 42927 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.060 |
| SRR1783600 | control | 1.216 |
| SRR1783602 | moderate drought stress | 1.224 |
| SRR1811619 | moderate drought stress | 1.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.800 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.634 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.170 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.236 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.570 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.816 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.822 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.774 |
| SRR2868004 | Drought Stress (root) | 3.510 |
| SRR2967015 | Control (root) | 3.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.060 |
| SRR9715740 | Leaf | 1.665 |
| SRR9715741 | Leaf | 0.756 |
| SRR9715739 | Root | 0.549 |
| SRR9715742 | Root | 2.109 |
| SRR9715743 | Root | 2.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.421 |
| SRR8749028 | MeJA induced 9h | 0.431 |
| SRR8749029 | MeJA induced 9h | 0.233 |
| SRR8749030 | Uninduced | 0.305 |
| SRR8749031 | Uninduced | 0.046 |
| SRR8749032 | Uninduced | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.316 |
| SRR8400027 | Control - Root | 5.530 |