Gene detail information of Glyur000819s00036704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04220.1 | 6.00E-52 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AES89817.2 | 1.60E-127 | disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula] |
| COG | YP_006806619.1 | 7.00E-06 | transcriptional regulator, SARP family protein [Nocardia brasiliensis ATCC 700358] |
| Swissprot | tr|O23530|SNC1_ARATH | 1.00E-48 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|G7JCP8|G7JCP8_MEDTR | 6.00E-128 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES89817.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00819 | 34306 | 37997 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000819s00036704.1 | PF01582.15 | TIR | 20 | 152 | 6.30E-35 |
| Glyur000819s00036704.1 | PF00931.17 | NB-ARC | 159 | 316 | 2.00E-24 |
| Glyur000819s00036704.1 | PF00560.28 | LRR_1 | 344 | 364 | 0.65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.772 |
| SRR1783600 | control | 1.596 |
| SRR1783602 | moderate drought stress | 3.899 |
| SRR1811619 | moderate drought stress | 3.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.196 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.154 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.895 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.020 |
| SRR2868004 | Drought Stress (root) | 4.200 |
| SRR2967015 | Control (root) | 4.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.077 |
| SRR9715740 | Leaf | 31.768 |
| SRR9715741 | Leaf | 45.601 |
| SRR9715739 | Root | 0.701 |
| SRR9715742 | Root | 1.914 |
| SRR9715743 | Root | 1.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.050 |
| SRR8749028 | MeJA induced 9h | 0.133 |
| SRR8749029 | MeJA induced 9h | 0.086 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.012 |
| SRR8749032 | Uninduced | 0.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.451 |
| SRR8400027 | Control - Root | 4.166 |