Gene detail information of Glyur000819s00036703 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21880.1 | 3.00E-07 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_007132966.1 | 1.03E-25 | hypothetical protein PHAVU_011G140100g [Phaseolus vulgaris] |
| Swissprot | tr|O49711|PP335_ARATH | 6.00E-08 | Pentatricopeptide repeat-containing protein At4g21880, mitochondrial (Precursor) |
| trEMBL | tr|K7LUL2|K7LUL2_SOYBN | 2.00E-26 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G16433.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00819 | 31392 | 33648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.282 |
| SRR1783600 | control | 0.160 |
| SRR1783602 | moderate drought stress | 2.989 |
| SRR1811619 | moderate drought stress | 3.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.884 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.413 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.142 |
| SRR2868004 | Drought Stress (root) | 3.410 |
| SRR2967015 | Control (root) | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.338 |
| SRR9715740 | Leaf | 9.562 |
| SRR9715741 | Leaf | 36.764 |
| SRR9715739 | Root | 0.202 |
| SRR9715742 | Root | 0.823 |
| SRR9715743 | Root | 0.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.830 |
| SRR8749028 | MeJA induced 9h | 0.616 |
| SRR8749029 | MeJA induced 9h | 0.625 |
| SRR8749030 | Uninduced | 0.654 |
| SRR8749031 | Uninduced | 0.316 |
| SRR8749032 | Uninduced | 0.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.210 |
| SRR8400027 | Control - Root | 2.502 |