Gene detail information of Glyur000818s00024589 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49480.1 | 4.00E-39 | Ca2+-binding protein 1 |
| NR | XP_003609790.1 | 2.05E-78 | Hypersensitive reaction associated Ca2+-binding protein [Medicago truncatula] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 7.00E-12 | Putative calcium-binding protein CML19 |
| trEMBL | tr|G7JNY0|G7JNY0_MEDTR | 8.00E-79 | Nacl-inducible Ca2+-binding protein {ECO:0000313|EMBL:AES91987.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00818 | 63942 | 64442 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000818s00024589.1 | PF13499.1 | EF-hand_7 | 20 | 77 | 2.70E-08 |
| Glyur000818s00024589.1 | PF13202.1 | EF-hand_5 | 98 | 120 | 3.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.432 |
| SRR1783600 | control | 4.508 |
| SRR1783602 | moderate drought stress | 3.825 |
| SRR1811619 | moderate drought stress | 3.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.827 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.138 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 817.379 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 830.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.628 |
| SRR2868004 | Drought Stress (root) | 195.987 |
| SRR2967015 | Control (root) | 97.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1273.218 |
| SRR9715740 | Leaf | 2074.039 |
| SRR9715741 | Leaf | 2748.897 |
| SRR9715739 | Root | 387.416 |
| SRR9715742 | Root | 336.988 |
| SRR9715743 | Root | 352.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 452.547 |
| SRR8749028 | MeJA induced 9h | 447.898 |
| SRR8749029 | MeJA induced 9h | 1191.963 |
| SRR8749030 | Uninduced | 45.221 |
| SRR8749031 | Uninduced | 84.811 |
| SRR8749032 | Uninduced | 241.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.265 |
| SRR8400027 | Control - Root | 56.560 |