Gene detail information of Glyur000818s00024586 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49510.2 | 5.00E-86 | prefoldin 3 |
| NR | XP_002519249.1 | 4.76E-116 | prefoldin subunit, putative [Ricinus communis] |
| Swissprot | tr|P57741|PFD3_ARATH | 3.00E-109 | Probable prefoldin subunit 3 |
| trEMBL | tr|B9RZT0|B9RZT0_RICCO | 2.00E-116 | Prefoldin subunit, putative {ECO:0000313|EMBL:EEF43113.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00818 | 16654 | 22479 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000818s00024586.1 | PF02996.12 | Prefoldin | 58 | 179 | 1.40E-30 |
| Glyur000818s00024586.2 | PF02996.12 | Prefoldin | 58 | 179 | 1.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.224 |
| SRR1783600 | control | 7.250 |
| SRR1783602 | moderate drought stress | 6.203 |
| SRR1811619 | moderate drought stress | 6.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.500 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.416 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.785 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.914 |
| SRR2868004 | Drought Stress (root) | 20.802 |
| SRR2967015 | Control (root) | 23.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.964 |
| SRR9715740 | Leaf | 8.291 |
| SRR9715741 | Leaf | 11.525 |
| SRR9715739 | Root | 4.880 |
| SRR9715742 | Root | 14.102 |
| SRR9715743 | Root | 12.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.742 |
| SRR8749028 | MeJA induced 9h | 16.986 |
| SRR8749029 | MeJA induced 9h | 19.832 |
| SRR8749030 | Uninduced | 13.271 |
| SRR8749031 | Uninduced | 8.275 |
| SRR8749032 | Uninduced | 10.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.680 |
| SRR8400027 | Control - Root | 25.008 |