Gene detail information of Glyur000817s00031376 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29640.1 | 4.00E-64 | JOSEPHIN-like protein |
| NR | XP_006575404.1 | 2.10E-113 | PREDICTED: josephin-like protein-like [Glycine max] |
| Swissprot | tr|O82391|JOSL_ARATH | 6.00E-78 | Josephin-like protein |
| trEMBL | tr|K7KA59|K7KA59_SOYBN | 8.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39056.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00817 | 82235 | 83433 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | Josephin |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000817s00031376.1 | PF02099.12 | Josephin | 12 | 178 | 2.70E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.168 |
| SRR1783600 | control | 3.972 |
| SRR1783602 | moderate drought stress | 4.120 |
| SRR1811619 | moderate drought stress | 3.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.293 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.173 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.909 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.029 |
| SRR2868004 | Drought Stress (root) | 12.940 |
| SRR2967015 | Control (root) | 12.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.151 |
| SRR9715740 | Leaf | 9.437 |
| SRR9715741 | Leaf | 5.186 |
| SRR9715739 | Root | 7.450 |
| SRR9715742 | Root | 4.751 |
| SRR9715743 | Root | 6.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.004 |
| SRR8749028 | MeJA induced 9h | 4.167 |
| SRR8749029 | MeJA induced 9h | 2.159 |
| SRR8749030 | Uninduced | 3.619 |
| SRR8749031 | Uninduced | 2.763 |
| SRR8749032 | Uninduced | 2.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.541 |
| SRR8400027 | Control - Root | 6.458 |