Gene detail

Gene detail information of Glyur000816s00024881

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68200.1	1.00E-69	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004497020.1	0	PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9C9F5\|C3H15_ARATH	1.00E-86	Zinc finger CCCH domain-containing protein 15
trEMBL	tr\|A0A072VQ63\|A0A072VQ63_MEDTR	0	Zinc finger CCCH domain protein {ECO:0000313\|EMBL:KEH44164.1}

Sequence

Transcript Sequence

>Glyur000816s00024881.1
AAAATTCCCTCTCCTTCTCTCTCGAGAAAGCTCAGAAGCTGCTGTGAGCACTCGATCGTTCGCTGAACAAAATGCATAACCAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCGCCGCCGGTCAAATGCACTCCAACGGCAGCGCCTTTGCTTCGCTGTACTCCGCTCTGTCGAACGACAATCTTCCGTCCCTCTCGGGAAACTGCAGCAACGGCGGCGGCGTCTCGCTTTACCCGTACTCTGACTCGGGAACTCAGTACGACTCGTGCGTGATCCAGAAGCACCAGGACATGGTGAATCGCCACAGCATGTGCCTCACCCGCCTCGTGGAGACCTCCAAAGAGGTGGAAGCTCTGAGGCAAGAGAATAGCCAGCTCCGTTCCGTGAACAAGGAGCTGCAGAAGCAGCTAAACCTTGTCATCCAGGTTTCCCTGGAGAATCGCATTGGTGGCGGTTCCTCTGGCCAGACTCAGACGACGCCGTTTGATGTCTTCCACGGCTTCCGTGGCTTGAATATTGGGGACGGGAAGGAAAACTGCGCTGACTGGAATGAGAATAATATTAACAATAATATTGGTAATAAGGAGCTGCAGCAGGATCAAGTCTCGGACGAGAGTCCAACCAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGNTTCTCGCTGCCTAAGAGCATATCTGTGAGGTCCAATGGCTACCTGAAGATGGCCCAGACTGCTGCTGTTGCCACTAATAATAATAATGCTTGTCGCACCAAGGGTGCCACTCGCTCCCGCGCCTCCTCCACTCCCCCTGATGCCGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTATAACCAAGGGATGTTCAAGACTGAGCTNTGTAACAAATGGCAGGAAACTGGCACATGCCCCTATGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTACGTCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTGGTATGCCCATATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATATCACAACCTAAGCCCAGAACAATGAAGCTGGACAGATAAGATCATAGTCTGAGAGAGGGGGTTGTTTGTATGACTCAAAACGTGAACAGTACATAATATTCTTGATTGTGTAATTACAAACACGGACAGGCATGAGCTAAAAATAATAATGAAAAAGTAAGGGGAGAAAAAAAAGGAGATGAGGTCTAGAACAGGATTTTTGAGGAGAATGTGGTTGGTCGTCATGTCTTTCTTTTTTCTCCCCCATAAGTTTGACATTTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00816	20503	23330	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000816s00024881.1	PF00642.19	zf-CCCH	272	297	9.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.936
SRR1783600	control	0.953
SRR1783602	moderate drought stress	0.663
SRR1811619	moderate drought stress	0.639

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.838
DRR006520	Root Summer glycyrrhizin high producing strain	3.867
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.073
DRR006524	Root Summer glycyrrhizin low producing strain	2.151
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.617

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.745
SRR2868004	Drought Stress (root)	1.498
SRR2967015	Control (root)	1.490

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.456
SRR9715740	Leaf	1.155
SRR9715741	Leaf	0.529
SRR9715739	Root	0.869
SRR9715742	Root	2.113
SRR9715743	Root	2.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.208
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.733
SRR8400027	Control - Root	2.478