Gene detail information of Glyur000816s00024880 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68190.1 | 3.00E-52 | B-box zinc finger family protein |
| NR | XP_003535713.1 | 0 | PREDICTED: putative zinc finger protein At1g68190-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C9F4|COLX_ARATH | 4.00E-64 | Putative zinc finger protein At1g68190 |
| trEMBL | tr|K7LLP6|K7LLP6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G41540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00816 | 11747 | 16587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.371 |
| SRR1783600 | control | 0.365 |
| SRR1783602 | moderate drought stress | 1.788 |
| SRR1811619 | moderate drought stress | 1.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.146 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.593 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.546 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.725 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.966 |
| SRR2868004 | Drought Stress (root) | 17.754 |
| SRR2967015 | Control (root) | 26.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.351 |
| SRR9715740 | Leaf | 7.008 |
| SRR9715741 | Leaf | 12.382 |
| SRR9715739 | Root | 0.051 |
| SRR9715742 | Root | 0.399 |
| SRR9715743 | Root | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.780 |
| SRR8749028 | MeJA induced 9h | 6.588 |
| SRR8749029 | MeJA induced 9h | 3.553 |
| SRR8749030 | Uninduced | 3.631 |
| SRR8749031 | Uninduced | 4.726 |
| SRR8749032 | Uninduced | 6.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.242 |
| SRR8400027 | Control - Root | 7.175 |