Gene detail

Gene detail information of Glyur000815s00035013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09820.1	1.00E-19	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_004513354.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q3EDF8\|PPR28_ARATH	2.00E-19	Pentatricopeptide repeat-containing protein At1g09900
trEMBL	tr\|K7MWI8\|K7MWI8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G05960.3}

Sequence

Transcript Sequence

>Glyur000815s00035013.1
ATGGGAATTCGAAACCTCTGCAACATACTCAGGTTCTTCTCAATTCCTCACTCTTGCTCAACCCTTCTCTTCTCTCACTTGTTCTCCAACACCCCACTTTCAATCACCCTTTCCCACTCCCCAAGTTCCTCTCTTTCCTCAACTGGGTGTTACCCTTTTGCGAGTTCTTCCGCTATATCCCCTTATATCGATGATGGGCACGCGTGCTTGAAGCTTGGTTTGCAATTTCTAACTCGTAGGTACTTTTGCTCTTACCCTTATTCTTCCTATAAGGATAGACCTTATGCTACTTCAAAGCAAGTTTCTGAAATCATTGCATTGATTCGTGAGGGTGTGAATGATTTGGAGTCAAAGTTGAACATGATGAATGTGTCTTTGTCTATGGCATCGGTTGTTGACATTTTTGAGGTATTGGCAAGTGAGAGAGTCTCAGCATTGGTGTTCTTTGATTGGCTTAGAGCTTCACATTCTGATATTTGTTGTGATCCTGAGATAGGTAGTTTGGTTGTTGATAACTGTGGGTTGTTGGGGAATTTTGAGGCAATGGTTCCCATTTTGACTGAATTTAACACTAAAGGGGTGTGTTTGAGAAGGAAGGCATTTAGGTTCTTGCTTGTTTTGAGCTTGGACAAGGCTTCTACTATGGAATGTGTGAGGAGGATTGTGGGTGTGCTTAATGAGGTTGGTGGGGTGTGTCAAAGTTCTGGAATTCAGTTGTTGATAGAGATGTTTAGCTTTCCGGGTTCTTTCAATATAGCCGAGTTTGTGATAGGAACAACCAGGAGGAAGGAGGTGAGTCATTATAATGCCTTATTGAGGATCATGTGCAAAAAAGGTGATTATGAAAGAGCAGGAGATTTGGTAAAGGAGATGAAGAGAAGTGGTTTGGATCCAAATAAAAGTACTTATAATTTGTTGGTCAGTTGTCTATTCAAAAATGGTAAATTTGCTGAGGCTTGCCAAGTTCTTGAGACTNTGGAGAAAGGCTACGGTTTACCGGACGAGTTTACATTTGATGTTCTTGTTAGCTTATTATGTAAACGTCGCCAGTTTGACTTAGCTTTGAAGCTTCTTGATAGAATGAATTTGAAGGGTATCGAACCTTGTATTTTAACTCATGCTGNGGTGATAAAGTCTTATTTTGGATCAGGAAGATATGAGGAAGCTCATGAGTATGTTGTTGATTCTGCTGCTAAGCGGAGCTATTCCAGCAATGCAAACTACAGCTTACTTGCTACTCTTCATTTGAAGAAAGGAAATGTGCTACATGCCCAAAAGGTTCTTCATGAGATGATGGACAAGGGTCTTAAGCCTAATCTTCCGGTGTACATGAAGATAAGGAAGTGTCTTGAGAAGAAGAATGAAAAAGATTTGTCTTTGGATTTATTAAGAAGATACTCGAGCNTGATTGAAAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00815	55202	56620	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000815s00035013.1	PF13041.1	PPR_2	265	311	2.80E-13
Glyur000815s00035013.1	PF13812.1	PPR_3	336	368	0.00075
Glyur000815s00035013.1	PF13812.1	PPR_3	408	438	0.029

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.576
SRR1783600	control	0.593
SRR1783602	moderate drought stress	1.143
SRR1811619	moderate drought stress	1.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.658
DRR006520	Root Summer glycyrrhizin high producing strain	1.646
DRR006521	Root Winter glycyrrhizin high producing strain	1.235
DRR006522	Root Winter glycyrrhizin high producing strain	1.275
DRR006523	Root Summer glycyrrhizin low producing strain	1.657
DRR006524	Root Summer glycyrrhizin low producing strain	1.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.127

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.186
SRR2868004	Drought Stress (root)	1.791
SRR2967015	Control (root)	1.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.973
SRR9715740	Leaf	1.526
SRR9715741	Leaf	0.831
SRR9715739	Root	0.211
SRR9715742	Root	0.918
SRR9715743	Root	1.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.838
SRR8749028	MeJA induced 9h	0.707
SRR8749029	MeJA induced 9h	0.468
SRR8749030	Uninduced	0.337
SRR8749031	Uninduced	0.346
SRR8749032	Uninduced	0.169

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.186
SRR8400027	Control - Root	1.852