Gene detail

Gene detail information of Glyur000814s00023375

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32320.1	4.00E-175	tRNAHis guanylyltransferase
NR	XP_004494705.1	0	PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X1 [Cicer arietinum]
COG	YP_634103.1	1.00E-22	tRNAHis guanylyltransferase [Myxococcus xanthus DK 1622]
Swissprot	tr\|F4IRQ5\|THG1_ARATH	0	tRNA(His) guanylyltransferase 1
trEMBL	tr\|A0A072U5Y9\|A0A072U5Y9_MEDTR	0	tRNA(His) guanylyltransferase {ECO:0000313\|EMBL:KEH24558.1}

Sequence

Transcript Sequence

>Glyur000814s00023375.1
ATGGCAAACAGCAAATATGAGTATGTCAAGTGTTTTGAACTTGAGGACGAGGTGATGTTTCCCAATTTCATCCTTGTTTGGATCAATGCCTGTAAATTTCACAAACCTTATGATGTAAATGCCCTGAAATTGATGAACTCTTGTGCTGTTGCGGTGCTTGAAGAGTATGCGGATATAGTCTTTGCATATGGGTTTAGTGATGAGTATACTTTTGTTTTCAAGAAGACTTCCAAGTTCTATGAAAGGCGTGCTAGCAAAGTGTTNTCCATCATTACTTCCTTTTTCTCATCTGTCTTTGTGAGAAAATGGGGTGAATTCTTCCCACAAAAAGAACTACAATCTCCTCCTTCATTCCATGGGCGAGTCATAGCTTGTGCATCCATAAAATCCCTTCAAGCATATCTTTTGTGGAGGCAAAATATCTGTCATTTGAATAATCAATATGATCAATGCTTTTGGCGTCTTGTCGAACGCNGAATGAATGAGATGGAAGCACGGGATTTCATCAATGGTGCTAAGAAATGCGACCTTAATGATCTTTTATTTGAGGAGTTCAATGTCAATTATAATACACTGGATCCAATATTCCGACAAGGTTCCTGTGTTTTAAAGACAATGGTAGGGGANGTCGTGAAGTACACAGAGAATGGTGATCCAGTTAAAAGGCACAGGAGAAAGATAATCACAGTGCATTCCAAGAAAATAGCAAGCACAAGATTTTGGAATGAGCAAACTATTCTTTTGAAGGANCTTGGTGTTTTTGTGGAGGAGATCAACAATGTGAAACCAGAGTATGTGANGTCCTTTGAATTTGATAGCAAATTGATGCCATCTACATGGATTGTAGTTCGANTAGATGGATGCCACTTCCACAGATTTTCTGAGATACATGAATTTGTGAAGCCAAATGATGATAGAGCTCTTAACTTGATGAATTCATGTGCAGTGGCTGTCTTAGAAGAGTTTAGGCAGGATATAATCTTTGCCTATGGGGTTAGTGATGAGTATAGCTTCATTCTTAAGAAATCCACTAATCTCTATCAAAGGAGAGCTAGTAAAATCATTTCAGCGNTTGTGTCTTTCTTCACATCCACTTATGTGATGAGATGGAAAGATTTCTTCCCACAAAGTGAGTTAAACTACCCTCCTTCTTTTGATGGACGAGCTGTGTGCTATCCATCTGCTGAGATTGTACGGGACTATCTTTCATGGAGACAAGTGGATTGCCACATCAACAATCAGTATAACTCTTGTTTCTGGAAGCTTGTTGCATCTGGAAAAAGCAAAAGGGAAGCTCAACAATGTTTGAAGGGTGCTCAACTGCAAAAGAAAATTGAGGAATTGGCTATTGACTACAATAAATTACCAGTGATGTTCCGACAAGGATCCTCAGTTTTTTGGGACAGGATAGACAATGTTCTCATTCATCAGGAGAATGGAGAGTCTTCTGAAAGTTATGGAATGGTCATTCTAGAACATACTGACATCATTGGATCAGCCTTTTGGTCAGAACACCCAAACATCCTTGATGAAAAGAAGGATGAAAAGCTATATGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00814	92009	93568	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006400 tRNA modification

molecular_function

GO:0000287 magnesium ion binding

GO:0008193 tRNA guanylyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000814s00023375.1	PF04446.7	Thg1	30	124	7.60E-30
Glyur000814s00023375.1	PF14413.1	Thg1C	129	248	9.90E-29
Glyur000814s00023375.1	PF04446.7	Thg1	264	393	9.60E-46
Glyur000814s00023375.1	PF14413.1	Thg1C	395	509	2.60E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.139
SRR1783600	control	2.450
SRR1783602	moderate drought stress	1.369
SRR1811619	moderate drought stress	1.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.103
DRR006520	Root Summer glycyrrhizin high producing strain	2.140
DRR006521	Root Winter glycyrrhizin high producing strain	1.072
DRR006522	Root Winter glycyrrhizin high producing strain	0.970
DRR006523	Root Summer glycyrrhizin low producing strain	1.785
DRR006524	Root Summer glycyrrhizin low producing strain	1.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.177
SRR2868004	Drought Stress (root)	5.833
SRR2967015	Control (root)	7.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.687
SRR9715740	Leaf	5.505
SRR9715741	Leaf	4.531
SRR9715739	Root	0.890
SRR9715742	Root	3.174
SRR9715743	Root	2.801

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.668
SRR8749028	MeJA induced 9h	5.419
SRR8749029	MeJA induced 9h	2.455
SRR8749030	Uninduced	3.091
SRR8749031	Uninduced	2.344
SRR8749032	Uninduced	1.873

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.408
SRR8400027	Control - Root	1.783